ENSGALG00000006912


Gallus gallus

Features
Gene ID: ENSGALG00000006912
  
Biological name :CPEB3
  
Synonyms : CPEB3 / cytoplasmic polyadenylation element binding protein 3
  
Possible biological names infered from orthology : Q7TN99 / Q8NE35
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 20843233
Gene end: 20919088
  
Corresponding Affymetrix probe sets: Gga.17491.1.S1_s_at (Chicken Array)   GgaAffx.22098.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000011187
Ensembl peptide - ENSGALP00000056491
NCBI entrez gene - 423816     See in Manteia.
RefSeq - XM_421688
RefSeq - XM_015288843
RefSeq - XM_015288844
RefSeq - XM_004942160
RefSeq - XM_015288837
RefSeq - XM_015288838
RefSeq - XM_015288839
RefSeq - XM_015288840
RefSeq - XM_015288841
RefSeq - XM_015288842
swissprot - E1BT34
swissprot - A0A1D5PU88
Ensembl - ENSGALG00000006912
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpeb3ENSDARG00000060103Danio rerio
 CPEB3ENSG00000107864Homo sapiens
 Cpeb3ENSMUSG00000039652Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CPEB4 / cytoplasmic polyadenylation element binding protein 4 / Q17RY0* / Q7TN98*ENSGALG0000003351263
CPEB2 / cytoplasmic polyadenylation element binding protein 2 / Q7Z5Q1* / cytoplasmic polyadenylation element-binding protein 2 isoform 1 *ENSGALG0000001451662
CPEB1 / RPS17* / P08708* / P70166* / Q9BZB8* / AC245033.1* / ribosomal protein S17* / cytoplasmic polyadenylation element binding protein 1* / Mus musculus cytoplasmic polyadenylation eleme...ENSGALG0000000215024


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR032296  Cytoplasmic polyadenylation element-binding protein, ZZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 biological_processGO:2000766 negative regulation of cytoplasmic translation IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030014 CCR4-NOT complex IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:1990124 messenger ribonucleoprotein complex IBA
 molecular_functionGO:0000900 translation repressor activity, mRNA regulatory element binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008135 translation factor activity, RNA binding IEA
 molecular_functionGO:0043022 ribosome binding IBA
 molecular_functionGO:0045182 translation regulator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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