ENSGALG00000002150


Gallus gallus

Features
Gene ID: ENSGALG00000002150
  
Biological name :CPEB1
  
Synonyms : CPEB1
  
Possible biological names infered from orthology : AC245033.1 / cytoplasmic polyadenylation element binding protein 1 / Mus musculus cytoplasmic polyadenylation element binding protein 1 (Cpeb1), transcript variant 4, mRNA. / P08708 / P70166 / Q9BZB8 / ribosomal protein S17 / RPS17
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 1264586
Gene end: 1290224
  
Corresponding Affymetrix probe sets: Gga.11063.1.S1_s_at (Chicken Array)   Gga.14042.1.S1_at (Chicken Array)   GgaAffx.25410.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003366
NCBI entrez gene - 415326     See in Manteia.
RefSeq - XM_015278849
RefSeq - NM_001293219
RefSeq - XM_004943630
RefSeq - XM_004943633
RefSeq Peptide - NP_001280148
swissprot - F1NY46
Ensembl - ENSGALG00000002150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpeb1aENSDARG00000045932Danio rerio
 cpeb1bENSDARG00000008454Danio rerio
 AC245033.1ENSG00000260836Homo sapiens
 CPEB1ENSG00000214575Homo sapiens
 RPS17ENSG00000182774Homo sapiens
 Cpeb1ENSMUSG00000025586Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CPEB4 / cytoplasmic polyadenylation element binding protein 4 / Q17RY0* / Q7TN98*ENSGALG0000003351230
CPEB3 / cytoplasmic polyadenylation element binding protein 3 / Q7TN99* / Q8NE35*ENSGALG0000000691228
CPEB2 / cytoplasmic polyadenylation element binding protein 2 / Q7Z5Q1* / cytoplasmic polyadenylation element-binding protein 2 isoform 1 *ENSGALG0000001451627


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR032292  Cytoplasmic polyadenylation element-binding protein 1, N-terminal
 IPR032296  Cytoplasmic polyadenylation element-binding protein, ZZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:2000766 negative regulation of cytoplasmic translation IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0043005 neuron projection IBA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:1990124 messenger ribonucleoprotein complex IBA
 molecular_functionGO:0000900 translation repressor activity, mRNA regulatory element binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0008135 translation factor activity, RNA binding IBA
 molecular_functionGO:0043022 ribosome binding IBA
 molecular_functionGO:0045182 translation regulator activity IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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