ENSG00000182774


Homo sapiens

Features
Gene ID: ENSG00000182774
  
Biological name :RPS17
  
Synonyms : P08708 / ribosomal protein S17 / RPS17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q25.2
Gene start: 82536750
Gene end: 82540564
  
Corresponding Affymetrix probe sets: 201665_x_at (Human Genome U133 Plus 2.0 Array)   211487_x_at (Human Genome U133 Plus 2.0 Array)   212578_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453894
Ensembl peptide - ENSP00000453910
Ensembl peptide - ENSP00000346046
Ensembl peptide - ENSP00000452889
NCBI entrez gene - 6218     See in Manteia.
OMIM - 180472
RefSeq - NM_001021
RefSeq Peptide - NP_001012
swissprot - A0A075B716
swissprot - H0YN73
swissprot - H0YN88
swissprot - P08708
Ensembl - ENSG00000182774
  
Related genetic diseases (OMIM): 612527 - Diamond-Blackfan anemia 4, 612527
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpeb1aENSDARG00000045932Danio rerio
 cpeb1bENSDARG00000008454Danio rerio
 CPEB1ENSGALG00000002150Gallus gallus
 Cpeb1ENSMUSG00000025586Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC245033.1ENSG0000026083699
CPEB4 / Q17RY0 / cytoplasmic polyadenylation element binding protein 4ENSG000001137427
CPEB1 / Q9BZB8 / cytoplasmic polyadenylation element binding protein 1ENSG000002145757
CPEB2 / Q7Z5Q1 / cytoplasmic polyadenylation element binding protein 2ENSG000001374497
CPEB3 / Q8NE35 / cytoplasmic polyadenylation element binding protein 3ENSG000001078647


Protein motifs (from Interpro)
Interpro ID Name
 IPR001210  Ribosomal protein S17e
 IPR018273  Ribosomal protein S17e, conserved site
 IPR036401  Ribosomal protein S17e-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 biological_processGO:0034101 erythrocyte homeostasis IMP
 biological_processGO:0042274 ribosomal small subunit biogenesis IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000078 Abnormality of the genital tract 
Show

 HP:0000079 Abnormality of the urinary tract 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
Show

 HP:0000457 Flat nose 
Show

 HP:0000823 Delayed puberty 
Show

 HP:0000980 Pallor 
Show

 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001875 Neutropenia 
Show

 HP:0001896 Reticulocytopenia 
Show

 HP:0001972 Macrocytic anemia 
Show

 HP:0001999 Facial dysmorphism 
Show

 HP:0002076 Migraine 
Show

 HP:0002488 Acute leukemia 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

 HP:0012133 Erythroid hypoplasia "Decreased count of erythroid precursor cells, that is, `erythroid lineage cells` (CL:0000764) in the bone marrow." [DDD:akelly]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr