ENSDARG00000070013


Danio rerio

Features
Gene ID: ENSDARG00000070013
  
Biological name :dmrt2b
  
Synonyms : dmrt2b / doublesex and mab-3 related transcription factor 2b
  
Possible biological names infered from orthology : DMRTC1 / Dmrtc1a / DMRTC1B / DMRTC2 / DMRT like family C1 / DMRT like family C1B / DMRT like family C2 / Doublesex- and mab-3-related transcription factor C1 / Doublesex- and mab-3-related transcription factor C2 / Q5HYR2 / Q8CGW9 / Q8IXT2 / Q9D9R7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 34213971
Gene end: 34220641
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093167
swissprot - F1R2L1
ZFIN ID - ZDB-GENE-080813-1
Ensembl - ENSDARG00000070013
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DMRTC1ENSG00000269502Homo sapiens
 DMRTC2ENSG00000142025Homo sapiens
 Q5HYR2ENSG00000184911Homo sapiens
 Dmrtc1bENSMUSG00000073027Mus musculus
 Dmrtc2ENSMUSG00000011349Mus musculus
 Q9D9R7ENSMUSG00000031323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dmrt2a / doublesex and mab-3 related transcription factor 2a / DMRT2* / Q8BG36* / Q9Y5R5* / doublesex and mab-3 related transcription factor 2*ENSDARG0000001507237
dmrta2 / DMRT-like family A2 / A2A9A2* / Q96SC8* / Doublesex- and mab-3-related transcription factor A2 *ENSDARG0000003941223
dmrt3a / P83758 / doublesex and mab-3 related transcription factor 3a / DMRT3* / Q80WT2* / Q9NQL9* / doublesex and mab-3 related transcription factor 3*ENSDARG0000003529020
dmrt1 / Q71MM5 / doublesex and mab-3 related transcription factor 1 / Q9QZ59* / Q9Y5R6*ENSDARG0000000734918


Protein motifs (from Interpro)
Interpro ID Name
 IPR001275  DM DNA-binding domain
 IPR026607  DMRT/protein doublesex/protein male abnormal 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0048747 muscle fiber development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart symmetry , abnormal
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 ZFA:0000123 liver liver symmetry , abnormal
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 ZFA:0000155 somite somite U-shaped , abnormal
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 ZFA:0001086 muscle pioneer muscle pioneer decreased amount , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk curved ventral , abnormal
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 ZFA:0009116 slow muscle cell slow muscle cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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