ENSDARG00000070553


Danio rerio

Features
Gene ID: ENSDARG00000070553
  
Biological name :rnmt
  
Synonyms : Q1MTD3 / RNA (guanine-7-) methyltransferase / rnmt
  
Possible biological names infered from orthology : O43148 / Q9D0L8
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 12649691
Gene end: 12681815
  
Corresponding Affymetrix probe sets: Dr.7641.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000083350
Ensembl peptide - ENSDARP00000157249
NCBI entrez gene - 562801     See in Manteia.
RefSeq - NM_001045000
RefSeq Peptide - NP_001038465
swissprot - Q1MTD3
ZFIN ID - ZDB-GENE-041008-25
Ensembl - ENSDARG00000070553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNMTENSGALG00000013889Gallus gallus
 RNMTENSG00000101654Homo sapiens
 RnmtENSMUSG00000009535Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004971  mRNA (guanine-N(7))-methyltransferase domain
 IPR016899  mRNA (guanine-N(7))-methyltransferase
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006370 7-methylguanosine mRNA capping IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0036265 RNA (guanine-N7)-methylation IBA
 biological_processGO:0106005 RNA 5"-cap (guanine-N7)-methylation IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005845 mRNA cap binding complex IBA
 molecular_functionGO:0003723 RNA binding ISS
 molecular_functionGO:0004482 mRNA (guanine-N7-)-methyltransferase activity IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
mRNA Capping
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000032261 rngtt / Q6NY98 / RNA guanylyltransferase and 5-phosphatase / O55236* / O60942*  / complex / reaction
 ENSDARG00000006816 gtf2f2b / general transcription factor IIF, polypeptide 2b / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / reaction
 ENSDARG00000069910 gtf2f2a / general transcription factor IIF, polypeptide 2a / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / reaction
 ENSDARG00000042724 supt5h / SPT5 homolog, DSIF elongation factor subunit / Supt5* / O55201* / O00267* / Transcription elongation factor SPT5 *  / reaction






 

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