ENSDARG00000071037


Danio rerio

Features
Gene ID: ENSDARG00000071037
  
Biological name :pex13
  
Synonyms : peroxisomal biogenesis factor 13 / pex13
  
Possible biological names infered from orthology : Peroxisomal membrane protein PEX13 / Q92968 / Q9D0K1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 23926796
Gene end: 23935450
  
Corresponding Affymetrix probe sets: Dr.6902.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000009932
NCBI entrez gene - 393618     See in Manteia.
RefSeq - NM_200645
RefSeq Peptide - NP_956939
swissprot - Q6PFQ3
ZFIN ID - ZDB-GENE-040426-1544
Ensembl - ENSDARG00000071037
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PEX13ENSGALG00000007832Gallus gallus
 PEX13ENSG00000162928Homo sapiens
 Pex13ENSMUSG00000020283Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR007223  Peroxin 13, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016560 protein import into peroxisome matrix, docking IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
E3 ubiquitin ligases ubiquitinate target proteins
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk peroxisome decreased amount , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct peroxisome decreased amount , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte peroxisome decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000004687 acaa1 / acetyl-CoA acyltransferase 1 / Q921H8* / Acaa1a* / Acaa1b* / P09110* / Q8VCH0* / acetyl-Coenzyme A acyltransferase 1B* / acetyl-Coenzyme A acyltransferase 1A*  / complex
 ENSDARG00000098443 zfand6 / zinc finger, AN1-type domain 6 / Q6FIF0* / Q9DCH6* / zinc finger AN1-type containing 6*  / reaction / complex
 ENSDARG00000070958 pex6 / peroxisomal biogenesis factor 6 / Q13608* / Q99LC9* / Peroxisome assembly factor 2 *  / complex / reaction
 ENSDARG00000043484 ube2d2 / ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) / P62838* / P62837* / Ube2d2a* / ubiquitin conjugating enzyme E2 D2* / ubiquitin-conjugating enzyme E2D 2A*  / complex / reaction
 ENSDARG00000028322 pex14 / peroxisomal biogenesis factor 14 / O75381* / Q9R0A0* / Peroxisomal membrane protein PEX14 *  / complex
 ENSDARG00000070654 pex5 / peroxisomal biogenesis factor 5 / O09012* / P50542* / Peroxisomal targeting signal 1 receptor *  / complex / reaction
 ENSDARG00000038576 ube2d1b / ubiquitin-conjugating enzyme E2D 1b / UBE2D1* / P51668* / P61080* / ubiquitin conjugating enzyme E2 D1*  / reaction / complex
 ENSDARG00000035149 pex12 / peroxisomal biogenesis factor 12 / O00623* / Q8VC48* / Peroxisome assembly protein 12 *  / complex
 ENSDARG00000041511 pex10 / peroxisomal biogenesis factor 10 / B1AUE5* / O60683* / Peroxisome biosis factor 10 *  / complex
 ENSDARG00000042821 agps / alkylglycerone phosphate synthase / O00116*  / complex
 ENSDARG00000086740 phyh / phytanoyl-CoA 2-hydroxylase / O14832* / O35386* / phytanoyl-CoA hydroxylase*  / complex
 ENSDARG00000062421 pex2 / peroxisomal biogenesis factor 2 / P28328*  / complex






 

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