ENSDARG00000074535


Danio rerio

Features
Gene ID: ENSDARG00000074535
  
Biological name :lingo2a
  
Synonyms : leucine rich repeat and Ig domain containing 2a / lingo2a
  
Possible biological names infered from orthology : leucine rich repeat and Ig domain containing 2 / LINGO2 / Q3URE9 / Q7L985
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 44545092
Gene end: 44591724
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000142351
Ensembl peptide - ENSDARP00000144150
NCBI entrez gene - 101884914     See in Manteia.
swissprot - A0A140LGH2
swissprot - A0A286YAB9
ZFIN ID - ZDB-GENE-080327-19
Ensembl - ENSDARG00000074535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LINGO2ENSGALG00000001869Gallus gallus
 LINGO2ENSG00000174482Homo sapiens
 Lingo2ENSMUSG00000045083Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lingo1a / leucine rich repeat and Ig domain containing 1a / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000003416551
lingo2b / leucine rich repeat and Ig domain containing 2b / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000006997050
Q66HV9 / lingo1b / leucine rich repeat and Ig domain containing 1b / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-l...ENSDARG0000003589949
CABZ01060891.1 / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3*ENSDARG0000006781546
lingo3a / leucine rich repeat and Ig domain containing 3a / Q6GQU6* / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000006197046
lingo4b / leucine rich repeat and Ig domain containing 4b / LINGO4* / Q6UY18* / leucine rich repeat and Ig domain containing 4*ENSDARG0000007852742
lingo4a / leucine rich repeat and Ig domain containing 4a / LINGO4* / Q6UY18* / leucine rich repeat and Ig domain containing 4*ENSDARG0000009490838
lrrc4c / leucine rich repeat containing 4C / Q9HCJ2*ENSDARG0000011341126
lrrc4ba / leucine rich repeat containing 4Ba / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000000459725
lrrc4bb / leucine rich repeat containing 4Bb / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000001479224
si:dkey-6l15.1 / LRRC4C (1 of many) / LRRC4C* / Q8C031* / Q9HCJ2* / leucine rich repeat containing 4C* / Leucine-rich repeat-containing protein 4C *ENSDARG0000001673924
lrrn1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSDARG0000006011524
si:ch211-180f4.1ENSDARG0000007711224
lrrc4.2 / leucine rich repeat containing 4.2 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000000302023
lrfn4b / leucine rich repeat and fibronectin type III domain containing 4b / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000007807822
lrfn2b / leucine rich repeat and fibronectin type III domain containing 2b / LRFN2* / Q80TG9* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2* / Leucine-rich re...ENSDARG0000007748922
lrrn3b / leucine rich repeat neuronal 3b / LRRN3* / Q9H3W5* / leucine rich repeat neuronal 3*ENSDARG0000010270222
lrrc4.1 / leucine rich repeat containing 4.1 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000006940222
lrfn5b / leucine rich repeat and fibronectin type III domain containing 5b / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007939622
lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000005513222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021628 olfactory nerve formation IMP
 biological_processGO:0071699 olfactory placode morphogenesis IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000249 cranial nerve I cranial nerve I axon mislocalised , abnormal
Show

 ZFA:0000554 olfactory epithelium olfactory epithelium shape , abnormal
olfactory epithelium organization quality , abnormal
Show

 ZFA:0005661 olfactory bulb glomerulus olfactory bulb glomerulus aplastic/hypoplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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