ENSDARG00000077489


Danio rerio

Features
Gene ID: ENSDARG00000077489
  
Biological name :lrfn2b
  
Synonyms : leucine rich repeat and fibronectin type III domain containing 2b / lrfn2b
  
Possible biological names infered from orthology : leucine rich repeat and fibronectin type III domain containing 2 / Leucine-rich repeat and fibronectin type-III domain-containing protein 2 / LRFN2 / Q80TG9 / Q9ULH4
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 25370
Gene end: 76300
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098993
Ensembl peptide - ENSDARP00000126977
NCBI entrez gene - 558484     See in Manteia.
swissprot - E7FE43
swissprot - R4GER4
ZFIN ID - ZDB-GENE-121214-111
Ensembl - ENSDARG00000077489
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRFN2ENSGALG00000010050Gallus gallus
 LRFN2ENSG00000156564Homo sapiens
 Lrfn2ENSMUSG00000040490Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*ENSDARG0000010624868
lrfn4b / leucine rich repeat and fibronectin type III domain containing 4b / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000007807846
lrfn5a / leucine rich repeat and fibronectin type III domain containing 5a / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007123045
lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000005513245
lrfn5b / leucine rich repeat and fibronectin type III domain containing 5b / LRFN5* / Q8BXA0* / Q96NI6* / leucine rich repeat and fibronectin type III domain containing 5* / Leucine-rich re...ENSDARG0000007939644
zgc:172282ENSDARG0000010505941
LRFN3 / zmp:0000001073 / Q8BLY3* / Q9BTN0* / leucine rich repeat and fibronectin type III domain containing 3* / Leucine-rich repeat and fibronectin type-III domain-containing protein 3 *ENSDARG0000003950038
lrfn1 / leucine rich repeat and fibronectin type III domain containing 1 / Q2WF71* / Q9P244* / Leucine-rich repeat and fibronectin type III domain-containing protein 1 *ENSDARG0000002760236
lingo2a / leucine rich repeat and Ig domain containing 2a / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000007453518
lrrn3b / leucine rich repeat neuronal 3b / LRRN3* / Q9H3W5* / leucine rich repeat neuronal 3*ENSDARG0000010270218
lingo2b / leucine rich repeat and Ig domain containing 2b / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000006997018
lingo3a / leucine rich repeat and Ig domain containing 3a / Q6GQU6* / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000006197017
CABZ01060891.1 / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3*ENSDARG0000006781517
si:ch211-180f4.1ENSDARG0000007711217
lrrc4ba / leucine rich repeat containing 4Ba / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000000459717
lrrn3a / leucine rich repeat neuronal 3a / LRRN3* / Q8CBC6* / Q9H3W5* / leucine rich repeat neuronal 3* / Leucine-rich repeat neuronal protein 3 *ENSDARG0000007756917
lrrc4bb / leucine rich repeat containing 4Bb / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000001479217
lrrc4c / leucine rich repeat containing 4C / Q9HCJ2*ENSDARG0000011341117
lingo1a / leucine rich repeat and Ig domain containing 1a / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000003416517
lrrn1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSDARG0000006011516


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Synaptic adhesion-like molecules


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000078149 grin2ca / glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca / Q14957* / GRIN2C* / Q01098* / Glutamate receptor ionotropic, NMDA 2C * / glutamate ionotropic receptor NMDA type subunit 2C*  / reaction / complex
 ENSDARG00000077560 grin2cb / glutamate receptor, ionotropic, N-methyl D-aspartate 2Cb / Q14957* / GRIN2C* / Q01098* / Glutamate receptor ionotropic, NMDA 2C * / glutamate ionotropic receptor NMDA type subunit 2C*  / reaction / complex
 ENSDARG00000070543 grin2ab / glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b / Q12879* / GRIN2A* / P35436* / Glutamate receptor ionotropic, NMDA 2A * / glutamate ionotropic receptor NMDA type subunit 2A*  / complex / reaction
 ENSDARG00000055132 lrfn4a / leucine rich repeat and fibronectin type III domain containing 4a / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...  / reaction / complex
 ENSDARG00000077489 lrfn2b / leucine rich repeat and fibronectin type III domain containing 2b / LRFN2* / Q80TG9* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2* / Leucine-rich re...  / reaction / complex
 ENSDARG00000102216 dlg1l / Q5PYH5 / discs, large (Drosophila) homolog 1, like / DLG1* / Q12959* / Q811D0* / Disks large homolog 1 * / discs large MAGUK scaffold protein 1*  / reaction / complex
 ENSDARG00000106248 BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*  / reaction / complex
 ENSDARG00000091348 rtn3 / reticulon 3 / O95197* / Q9ES97*  / complex / reaction
 ENSDARG00000009677 dlg1 / Q5PYH6 / discs, large homolog 1 (Drosophila) / Q12959* / Q811D0* / Disks large homolog 1 * / discs large MAGUK scaffold protein 1*  / reaction / complex
 ENSDARG00000086207 grin2da / glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a / Q03391* / GRIN2D* / O15399* / Glutamate receptor ionotropic, NMDA 2D * / glutamate ionotropic receptor NMDA type subunit 2D*  / reaction / complex
 ENSDARG00000030376 grin2bb / glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b / GRIN2B* / Q13224* / glutamate receptor, ionotropic, NMDA2B (epsilon 2)* / glutamate ionotropic recept...  / reaction / complex






 

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