ENSDARG00000091348


Danio rerio

Features
Gene ID: ENSDARG00000091348
  
Biological name :rtn3
  
Synonyms : reticulon 3 / rtn3
  
Possible biological names infered from orthology : O95197 / Q9ES97
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 17716601
Gene end: 17757529
  
Corresponding Affymetrix probe sets: Dr.17332.1.S1_at (Zebrafish Array)   Dr.6528.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000075271
Ensembl peptide - ENSDARP00000142824
NCBI entrez gene - 394047     See in Manteia.
swissprot - Q4G5W3
swissprot - Q7ZUD6
ZFIN ID - ZDB-GENE-030710-5
Ensembl - ENSDARG00000091348
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTN3ENSG00000133318Homo sapiens
 Rtn3ENSMUSG00000024758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtn1b / reticulon 1b / RTN1* / Q16799* / Q8K0T0* / reticulon 1*ENSDARG0000002114348
rtn1a / reticulon 1a / RTN1* / Q16799* / Q8K0T0* / reticulon 1*ENSDARG0000000649748
rtn4a / reticulon 4a / RTN4* / Q99P72* / Q9NQC3* / reticulon 4*ENSDARG0000004460146
rtn4b / reticulon 4b / RTN4* / Q9NQC3* / reticulon 4*ENSDARG0000010434741
rtn2a / reticulon 2a / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG0000001608827
rtn2b / reticulon 2b / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG0000005702723


Protein motifs (from Interpro)
Interpro ID Name
 IPR003388  Reticulon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Synaptic adhesion-like molecules


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000039500 LRFN3 / zmp:0000001073 / Q8BLY3* / Q9BTN0* / leucine rich repeat and fibronectin type III domain containing 3* / Leucine-rich repeat and fibronectin type-III domain-containing protein 3 *  / complex / reaction
 ENSDARG00000077489 lrfn2b / leucine rich repeat and fibronectin type III domain containing 2b / LRFN2* / Q80TG9* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2* / Leucine-rich re...  / complex / reaction
 ENSDARG00000106248 BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*  / reaction / complex






 

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