ENSDARG00000021143


Danio rerio

Features
Gene ID: ENSDARG00000021143
  
Biological name :rtn1b
  
Synonyms : reticulon 1b / rtn1b
  
Possible biological names infered from orthology : Q16799 / Q8K0T0 / reticulon 1 / RTN1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 20637866
Gene end: 20696957
  
Corresponding Affymetrix probe sets: Dr.673.1.A1_at (Zebrafish Array)   NM_001029948_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009989
Ensembl peptide - ENSDARP00000060202
Ensembl peptide - ENSDARP00000073534
Ensembl peptide - ENSDARP00000155258
NCBI entrez gene - 327065     See in Manteia.
RefSeq - NM_001328271
RefSeq - NM_001029948
RefSeq - NM_001328270
RefSeq - XM_005160490
RefSeq Peptide - NP_001025119
RefSeq Peptide - NP_001315199
RefSeq Peptide - NP_001315200
swissprot - Q4G5W6
swissprot - Q5TZI1
swissprot - F1R540
ZFIN ID - ZDB-GENE-030710-3
Ensembl - ENSDARG00000021143
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTN1ENSGALG00000012006Gallus gallus
 RTN1ENSG00000139970Homo sapiens
 Rtn1ENSMUSG00000021087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtn1a / reticulon 1a / RTN1* / Q16799* / Q8K0T0* / reticulon 1*ENSDARG0000000649738
rtn4b / reticulon 4b / RTN4* / Q9NQC3* / reticulon 4*ENSDARG0000010434721
rtn4a / reticulon 4a / RTN4* / Q99P72* / Q9NQC3* / reticulon 4*ENSDARG0000004460119
rtn3 / reticulon 3 / O95197* / Q9ES97*ENSDARG0000009134815
rtn2a / reticulon 2a / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG0000001608810
rtn2b / reticulon 2b / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG000000570278


Protein motifs (from Interpro)
Interpro ID Name
 IPR003388  Reticulon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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