ENSDARG00000006497


Danio rerio

Features
Gene ID: ENSDARG00000006497
  
Biological name :rtn1a
  
Synonyms : reticulon 1a / rtn1a
  
Possible biological names infered from orthology : Q16799 / Q8K0T0 / reticulon 1 / RTN1
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 31424586
Gene end: 31470439
  
Corresponding Affymetrix probe sets: Dr.4188.1.A1_at (Zebrafish Array)   Dr.4188.2.S1_at (Zebrafish Array)   NM_001029967_at (Zebrafish Genome Array with custom cdf files)   NM_199652_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057440
Ensembl peptide - ENSDARP00000071042
Ensembl peptide - ENSDARP00000071046
Ensembl peptide - ENSDARP00000124411
Ensembl peptide - ENSDARP00000146514
NCBI entrez gene - 323706     See in Manteia.
RefSeq - NM_001029967
RefSeq - NM_001319289
RefSeq - NM_199652
RefSeq Peptide - NP_001306218
RefSeq Peptide - NP_955946
RefSeq Peptide - NP_001025138
swissprot - F1Q8T8
swissprot - Q6PBQ4
swissprot - Q4G5V7
swissprot - F8W3D5
ZFIN ID - ZDB-GENE-030131-2426
Ensembl - ENSDARG00000006497
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTN1ENSGALG00000012006Gallus gallus
 RTN1ENSG00000139970Homo sapiens
 Rtn1ENSMUSG00000021087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtn1b / reticulon 1b / RTN1* / Q16799* / Q8K0T0* / reticulon 1*ENSDARG0000002114336
rtn4b / reticulon 4b / RTN4* / Q9NQC3* / reticulon 4*ENSDARG0000010434719
rtn4a / reticulon 4a / RTN4* / Q99P72* / Q9NQC3* / reticulon 4*ENSDARG0000004460117
rtn3 / reticulon 3 / O95197* / Q9ES97*ENSDARG0000009134814
rtn2a / reticulon 2a / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG000000160889
rtn2b / reticulon 2b / RTN2* / O75298* / O70622* / reticulon 2* / reticulon 2 (Z-band associated protein)*ENSDARG000000570278


Protein motifs (from Interpro)
Interpro ID Name
 IPR003388  Reticulon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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