ENSDARG00000034165


Danio rerio

Features
Gene ID: ENSDARG00000034165
  
Biological name :lingo1a
  
Synonyms : leucine rich repeat and Ig domain containing 1a / lingo1a
  
Possible biological names infered from orthology : leucine rich repeat and Ig domain containing 1 / Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 / LINGO1 / Q96FE5 / Q9D1T0
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 7229046
Gene end: 7230905
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000041819
Ensembl peptide - ENSDARP00000124225
NCBI entrez gene - 564943     See in Manteia.
swissprot - F1QJ67
swissprot - F8W4D7
ZFIN ID - ZDB-GENE-080327-16
Ensembl - ENSDARG00000034165
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LINGO1ENSGALG00000002708Gallus gallus
 LINGO1ENSG00000169783Homo sapiens
 Lingo1ENSMUSG00000049556Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q66HV9 / lingo1b / leucine rich repeat and Ig domain containing 1b / Q9D1T0* / LINGO1* / Q96FE5* / leucine rich repeat and Ig domain containing 1* / Leucine-rich repeat and immunoglobulin-l...ENSDARG0000003589979
lingo2a / leucine rich repeat and Ig domain containing 2a / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000007453552
CABZ01060891.1 / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3*ENSDARG0000006781550
lingo3a / leucine rich repeat and Ig domain containing 3a / Q6GQU6* / LINGO3* / P0C6S8* / leucine rich repeat and Ig domain containing 3* / Leucine-rich repeat and immunoglobulin-like domai...ENSDARG0000006197049
lingo4b / leucine rich repeat and Ig domain containing 4b / LINGO4* / Q6UY18* / leucine rich repeat and Ig domain containing 4*ENSDARG0000007852748
lingo4a / leucine rich repeat and Ig domain containing 4a / LINGO4* / Q6UY18* / leucine rich repeat and Ig domain containing 4*ENSDARG0000009490846
lingo2b / leucine rich repeat and Ig domain containing 2b / LINGO2* / Q7L985* / Q3URE9* / leucine rich repeat and Ig domain containing 2*ENSDARG0000006997043
lrrc4c / leucine rich repeat containing 4C / Q9HCJ2*ENSDARG0000011341126
lrrn1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSDARG0000006011526
lrrc4bb / leucine rich repeat containing 4Bb / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000001479225
si:ch211-180f4.1ENSDARG0000007711225
si:dkey-6l15.1 / LRRC4C (1 of many) / LRRC4C* / Q8C031* / Q9HCJ2* / leucine rich repeat containing 4C* / Leucine-rich repeat-containing protein 4C *ENSDARG0000001673925
lrrc4ba / leucine rich repeat containing 4Ba / Q9NT99* / LRRC4B* / P0C192* / leucine rich repeat containing 4B* / Leucine-rich repeat-containing protein 4B *ENSDARG0000000459724
lrrc4.1 / leucine rich repeat containing 4.1 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000006940223
lrfn4b / leucine rich repeat and fibronectin type III domain containing 4b / LRFN4* / Q6PJG9* / Q80XU8* / leucine rich repeat and fibronectin type III domain containing 4* / Leucine-rich re...ENSDARG0000007807823
lrrn3a / leucine rich repeat neuronal 3a / LRRN3* / Q8CBC6* / Q9H3W5* / leucine rich repeat neuronal 3* / Leucine-rich repeat neuronal protein 3 *ENSDARG0000007756923
lrrc4.2 / leucine rich repeat containing 4.2 / LRRC4* / Q99PH1* / Q9HBW1* / leucine rich repeat containing 4* / Leucine-rich repeat-containing protein 4 *ENSDARG0000000302023
BX548062.1 / LRFN2* / Q9ULH4* / leucine rich repeat and fibronectin type III domain containing 2*ENSDARG0000010624823
zgc:172282ENSDARG0000010505922
lrrn3b / leucine rich repeat neuronal 3b / LRRN3* / Q9H3W5* / leucine rich repeat neuronal 3*ENSDARG0000010270222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR026906  Leucine rich repeat 5
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0007409 axonogenesis IBA
 biological_processGO:0031103 axon regeneration IMP
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005154 epidermal growth factor receptor binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Axonal growth inhibition (RHOA activation)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000094673 rhoab / Q6DHM9 / ras homolog gene family, member Ab / RHOA* / Q9QUI0* / P61586* / ras homolog family member A*  / complex / reaction
 ENSDARG00000089444 omgb / oligodendrocyte myelin glycoprotein b / OMG* / P23515* / oligodendrocyte myelin glycoprotein*  / reaction / complex
 ENSDARG00000104023 mag / myelin associated glycoprotein / P20917* / P20916* / AC011452.1* / Mus musculus myelin-associated glycoprotein (Mag), transcript variant 5, mRNA.*  / reaction / complex
 ENSDARG00000088708 ngfra / nerve growth factor receptor a (TNFR superfamily, member 16) / NGFR* / P08138* / nerve growth factor receptor*  / complex / reaction
 ENSDARG00000089223 ngfrb / nerve growth factor receptor b / NGFR* / P08138* / nerve growth factor receptor*  / complex / reaction






 

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