ENSGALG00000002708


Gallus gallus

Features
Gene ID: ENSGALG00000002708
  
Biological name :LINGO1
  
Synonyms : Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 / LINGO1 / Q50L44
  
Possible biological names infered from orthology : leucine rich repeat and Ig domain containing 1 / Q96FE5 / Q9D1T0
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 2667332
Gene end: 2767927
  
Corresponding Affymetrix probe sets: Gga.13113.1.S1_at (Chicken Array)   GgaAffx.25590.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004263
NCBI entrez gene - 415344     See in Manteia.
RefSeq - XM_015278868
RefSeq - NM_001024577
RefSeq - XM_015278867
RefSeq Peptide - NP_001019748
swissprot - R9PXL5
swissprot - Q50L44
Ensembl - ENSGALG00000002708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lingo1aENSDARG00000034165Danio rerio
 Q66HV9ENSDARG00000035899Danio rerio
 LINGO1ENSG00000169783Homo sapiens
 Lingo1ENSMUSG00000049556Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LINGO2 / leucine rich repeat and Ig domain containing 2 / Q3URE9* / Q7L985*ENSGALG0000000186960
LINGO3 / leucine rich repeat and Ig domain containing 3 / P0C6S8* / Q6GQU6* / Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 *ENSGALG0000000080657
LRRC4C / leucine rich repeat containing 4C / Q8C031* / Q9HCJ2* / Leucine-rich repeat-containing protein 4C *ENSGALG0000000794826
LRFN5 / leucine rich repeat and fibronectin type III domain containing 5 / Q8BXA0* / Q96NI6* / Leucine-rich repeat and fibronectin type-III domain-containing protein 5 *ENSGALG0000001250525
LRRN1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSGALG0000003509925
LRRN2 / leucine rich repeat neuronal 2 / O75325* / leucine rich repeat protein 2, neuronal*ENSGALG0000000063924
LRRN3 / leucine rich repeat neuronal 3 / Q8CBC6* / Q9H3W5* / Leucine-rich repeat neuronal protein 3 *ENSGALG0000000948823
LRFN2 / leucine rich repeat and fibronectin type III domain containing 2 / Q80TG9* / Q9ULH4* / Leucine-rich repeat and fibronectin type-III domain-containing protein 2 *ENSGALG0000001005021


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005154 epidermal growth factor receptor binding IBA


Pathways (from Reactome)
Pathway description
Axonal growth inhibition (RHOA activation)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000005594 OMG / oligodendrocyte myelin glycoprotein / P23515*  / complex / reaction
 ENSGALG00000035950 NGFR / P18519 / Tumor necrosis factor receptor superfamily member 16 / P08138* / nerve growth factor receptor*  / reaction / complex
 ENSGALG00000008443 ARHGDIA / rho GDP-dissociation inhibitor 1 / P52565* / Q99PT1* / Rho GDP dissociation inhibitor alpha*  / reaction / complex
 ENSGALG00000007732 RTN4R* / Q99PI8* / Q9BZR6* / reticulon 4 receptor*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr