ENSGALG00000009488


Gallus gallus

Features
Gene ID: ENSGALG00000009488
  
Biological name :LRRN3
  
Synonyms : leucine rich repeat neuronal 3 / LRRN3
  
Possible biological names infered from orthology : Leucine-rich repeat neuronal protein 3 / Q8CBC6 / Q9H3W5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 27489968
Gene end: 27492094
  
Corresponding Affymetrix probe sets: Gga.10847.1.S1_at (Chicken Array)   Gga.10847.1.S1_s_at (Chicken Array)   GgaAffx.22941.1.A1_at (Chicken Array)   GgaAffx.22941.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015433
NCBI entrez gene - 770169     See in Manteia.
RefSeq - XM_001232593
RefSeq - XM_015282409
swissprot - E1BVI9
Ensembl - ENSGALG00000009488
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrrn3aENSDARG00000077569Danio rerio
 lrrn3bENSDARG00000102702Danio rerio
 LRRN3ENSG00000173114Homo sapiens
 Lrrn3ENSMUSG00000036295Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRRN1 / leucine rich repeat neuronal 1 / Q61809* / Q6UXK5* / Leucine-rich repeat neuronal protein 1 *ENSGALG0000003509953
LRRN2 / leucine rich repeat neuronal 2 / O75325* / leucine rich repeat protein 2, neuronal*ENSGALG0000000063949
LINGO3 / leucine rich repeat and Ig domain containing 3 / P0C6S8* / Q6GQU6* / Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 *ENSGALG0000000080622
LINGO2 / leucine rich repeat and Ig domain containing 2 / Q3URE9* / Q7L985*ENSGALG0000000186921
LINGO1 / Q50L44 / Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 / Q9D1T0* / Q96FE5* / leucine rich repeat and Ig domain containing 1*ENSGALG0000000270820
LRRC4C / leucine rich repeat containing 4C / Q8C031* / Q9HCJ2* / Leucine-rich repeat-containing protein 4C *ENSGALG0000000794819
LRFN5 / leucine rich repeat and fibronectin type III domain containing 5 / Q8BXA0* / Q96NI6* / Leucine-rich repeat and fibronectin type-III domain-containing protein 5 *ENSGALG0000001250519
LRFN2 / leucine rich repeat and fibronectin type III domain containing 2 / Q80TG9* / Q9ULH4* / Leucine-rich repeat and fibronectin type-III domain-containing protein 2 *ENSGALG0000001005016


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR026906  Leucine rich repeat 5
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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