ENSDARG00000075139


Danio rerio

Features
Gene ID: ENSDARG00000075139
  
Biological name :hdac5
  
Synonyms : hdac5 / histone deacetylase 5
  
Possible biological names infered from orthology : histone deacetylase 5 isoform 4 / Q9UQL6
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 22905341
Gene end: 22976456
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000100072
Ensembl peptide - ENSDARP00000128586
NCBI entrez gene - 557486     See in Manteia.
RefSeq - XM_021471412
RefSeq - XM_021471413
RefSeq - XM_021471411
swissprot - X1WED5
swissprot - E7FH14
ZFIN ID - ZDB-GENE-121219-3
Ensembl - ENSDARG00000075139
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HDAC5ENSG00000108840Homo sapiens
 Hdac5ENSMUSG00000008855Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hdac4 / histone deacetylase 4 / P56524* / Q6NZM9*ENSDARG0000009834955
hdac7b / histone deacetylase 7b / HDAC7* / Q8WUI4* / Q8C2B3* / histone deacetylase 7*ENSDARG0000007385027
CABZ01074076.1 / HDAC7* / Q8C2B3* / Q8WUI4* / histone deacetylase 7*ENSDARG0000010517925
hdac9b / histone deacetylase 9b / HDAC9* / Q9UKV0* / histone deacetylase 9*ENSDARG0000005664224
hdac6 / histone deacetylase 6 / Q9UBN7* / Q9Z2V5*ENSDARG0000000838420
hdac10 / histone deacetylase 10 / Q6P3E7* / Q969S8*ENSDARG000000864589


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR017320  Histone deacetylase class II, eukaryotic
 IPR023801  Histone deacetylase domain
 IPR024643  Histone deacetylase, glutamine rich N-terminal domain
 IPR030703  Histone deacetylase 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0040029 regulation of gene expression, epigenetic IEA
 biological_processGO:0070932 histone H3 deacetylation IEA
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004407 histone deacetylase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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