ENSDARG00000056642


Danio rerio

Features
Gene ID: ENSDARG00000056642
  
Biological name :hdac9b
  
Synonyms : hdac9b / histone deacetylase 9b
  
Possible biological names infered from orthology : HDAC9 / histone deacetylase 9 / Q9UKV0
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 19840146
Gene end: 20006270
  
Corresponding Affymetrix probe sets: Dr.14159.1.A1_at (Zebrafish Array)   Dr.25756.1.S1_at (Zebrafish Array)   NM_200816_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073611
Ensembl peptide - ENSDARP00000073615
Ensembl peptide - ENSDARP00000117125
NCBI entrez gene - 393789     See in Manteia.
RefSeq - NM_200816
RefSeq Peptide - NP_957110
swissprot - F1QUC5
swissprot - E9QIJ9
swissprot - F1QUC6
ZFIN ID - ZDB-GENE-040109-7
Ensembl - ENSDARG00000056642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HDAC9ENSGALG00000010854Gallus gallus
 HDAC9ENSG00000048052Homo sapiens
 Hdac9ENSMUSG00000004698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hdac5 / histone deacetylase 5 / Q9UQL6* / histone deacetylase 5 isoform 4 *ENSDARG0000007513944
hdac4 / histone deacetylase 4 / P56524* / Q6NZM9*ENSDARG0000009834943
hdac7b / histone deacetylase 7b / HDAC7* / Q8WUI4* / Q8C2B3* / histone deacetylase 7*ENSDARG0000007385014
hdac6 / histone deacetylase 6 / Q9UBN7* / Q9Z2V5*ENSDARG000000083849
hdac10 / histone deacetylase 10 / Q6P3E7* / Q969S8*ENSDARG000000864588
CABZ01074076.1 / HDAC7* / Q8C2B3* / Q8WUI4* / histone deacetylase 7*ENSDARG000001051794


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR024643  Histone deacetylase, glutamine rich N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009325 erythroid lineage cell erythroid lineage cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr