ENSGALG00000010854


Gallus gallus

Features
Gene ID: ENSGALG00000010854
  
Biological name :HDAC9
  
Synonyms : HDAC9 / histone deacetylase 9
  
Possible biological names infered from orthology : Q9UKV0
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 29159908
Gene end: 29606221
  
Corresponding Affymetrix probe sets: Gga.1378.1.S1_s_at (Chicken Array)   GgaAffx.23346.1.S1_at (Chicken Array)   GgaAffx.23346.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017619
Ensembl peptide - ENSGALP00000063243
Ensembl peptide - ENSGALP00000060989
Ensembl peptide - ENSGALP00000060489
Ensembl peptide - ENSGALP00000056103
Ensembl peptide - ENSGALP00000049820
Ensembl peptide - ENSGALP00000049397
Ensembl peptide - ENSGALP00000048627
Ensembl peptide - ENSGALP00000043530
NCBI entrez gene - 420599     See in Manteia.
RefSeq - XM_015281428
RefSeq - NM_001030981
RefSeq - XM_015281421
RefSeq - XM_015281422
RefSeq - XM_015281423
RefSeq - XM_015281424
RefSeq - XM_015281425
RefSeq - XM_015281426
RefSeq - XM_015281427
RefSeq Peptide - NP_001026152
swissprot - A0A1L1RWM4
swissprot - A0A1L1RQC0
swissprot - A0A1L1RNZ0
swissprot - A0A1D5PT61
swissprot - A0A1D5PAQ7
swissprot - A0A1D5P9J3
swissprot - A0A1D5P7D8
swissprot - E1C7C0
swissprot - A0A1D5NT77
Ensembl - ENSGALG00000010854
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hdac9bENSDARG00000056642Danio rerio
 HDAC9ENSG00000048052Homo sapiens
 Hdac9ENSMUSG00000004698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HDAC4 / P83038 / Histone deacetylase 4 / P56524* / Q6NZM9*ENSGALG0000000428859
HDAC7 / histone deacetylase 7 / Q8C2B3* / Q8WUI4*ENSGALG0000003971041
HDAC10 / histone deacetylase 10 / Q6P3E7* / Q969S8*ENSGALG000000412518


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR017320  Histone deacetylase class II, eukaryotic
 IPR023801  Histone deacetylase domain
 IPR024643  Histone deacetylase, glutamine rich N-terminal domain
 IPR030703  Histone deacetylase 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0032869 cellular response to insulin stimulus IEA
 biological_processGO:0034983 peptidyl-lysine deacetylation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0070932 histone H3 deacetylation IEA
 biological_processGO:0070933 histone H4 deacetylation IEA
 biological_processGO:0090050 positive regulation of cell migration involved in sprouting angiogenesis IEA
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004407 histone deacetylase activity IEA
 molecular_functionGO:0005080 protein kinase C binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
 molecular_functionGO:0033558 protein deacetylase activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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