ENSDARG00000086458


Danio rerio

Features
Gene ID: ENSDARG00000086458
  
Biological name :hdac10
  
Synonyms : hdac10 / histone deacetylase 10
  
Possible biological names infered from orthology : Q6P3E7 / Q969S8
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 5015019
Gene end: 5033064
  
Corresponding Affymetrix probe sets: Dr.1758.1.S1_at (Zebrafish Array)   NM_199775_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109870
NCBI entrez gene - 327253     See in Manteia.
RefSeq - NM_199775
RefSeq - XM_021470455
RefSeq Peptide - NP_956069
swissprot - F1QCV2
ZFIN ID - ZDB-GENE-030131-5464
Ensembl - ENSDARG00000086458
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HDAC10ENSGALG00000041251Gallus gallus
 HDAC10ENSG00000100429Homo sapiens
 Hdac10ENSMUSG00000062906Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hdac6 / histone deacetylase 6 / Q9UBN7* / Q9Z2V5*ENSDARG0000000838436
hdac5 / histone deacetylase 5 / Q9UQL6* / histone deacetylase 5 isoform 4 *ENSDARG0000007513916
hdac4 / histone deacetylase 4 / P56524* / Q6NZM9*ENSDARG0000009834916
CABZ01074076.1 / HDAC7* / Q8C2B3* / Q8WUI4* / histone deacetylase 7*ENSDARG000001051798
hdac7b / histone deacetylase 7b / HDAC7* / Q8WUI4* / Q8C2B3* / histone deacetylase 7*ENSDARG000000738508
hdac9b / histone deacetylase 9b / HDAC9* / Q9UKV0* / histone deacetylase 9*ENSDARG000000566427


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR023801  Histone deacetylase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0106047 polyamine deacetylation IDA
 biological_processGO:0106048 spermidine deacetylation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0047611 acetylspermidine deacetylase activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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