ENSDARG00000075727


Danio rerio

Features
Gene ID: ENSDARG00000075727
  
Biological name :map1lc3cl
  
Synonyms : map1lc3cl / microtubule-associated protein 1 light chain 3 gamma, like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 45406299
Gene end: 45422778
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000102425
Ensembl peptide - ENSDARP00000142280
NCBI entrez gene - 100330105     See in Manteia.
swissprot - A0A140LGA1
swissprot - E7F4Z9
ZFIN ID - ZDB-GENE-140819-1
Ensembl - ENSDARG00000075727
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
map1lc3c / microtubule-associated protein 1 light chain 3 gamma / Q9BXW4*ENSDARG0000010052859
map1lc3a / microtubule-associated protein 1 light chain 3 alpha / Q91VR7* / Q9H492* / Microtubule-associated proteins 1A/1B light chain 3A *ENSDARG0000003360948
map1lc3b / microtubule-associated protein 1 light chain 3 beta / Q9GZQ8* / Q9CQV6* / A6NCE7* / MAP1LC3B2* / Microtubule-associated proteins 1A/1B light chain 3B * / microtubule associated p...ENSDARG0000010112746
gabarapa / GABA(A) receptor-associated protein a / Q9DCD6* / O95166* / GABARAP* / GABA type A receptor-associated protein* / Gamma-aminobutyric acid receptor-associated protein *ENSDARG0000003555735
gabarapb / GABA(A) receptor-associated protein bENSDARG0000005208235
gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSDARG0000002720034
zgc:92606 / Q8R3R8* / Q9H0R8* / GABARAPL1* / GABA type A receptor associated protein like 1* / Gamma-aminobutyric acid receptor-associated protein-like 1 *ENSDARG0000004097133


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005829 cytosol IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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