ENSDARG00000101127


Danio rerio

Features
Gene ID: ENSDARG00000101127
  
Biological name :map1lc3b
  
Synonyms : map1lc3b / microtubule-associated protein 1 light chain 3 beta
  
Possible biological names infered from orthology : A6NCE7 / MAP1LC3B2 / microtubule associated protein 1 light chain 3 beta 2 / Microtubule-associated proteins 1A/1B light chain 3B / Q9CQV6 / Q9GZQ8
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 12494079
Gene end: 12506027
  
Corresponding Affymetrix probe sets: Dr.24726.1.S1_at (Zebrafish Array)   NM_199604_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130443
NCBI entrez gene - 322425     See in Manteia.
RefSeq - NM_199604
RefSeq Peptide - NP_955898
swissprot - Q7ZUD8
ZFIN ID - ZDB-GENE-030131-1145
Ensembl - ENSDARG00000101127
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MAP1LC3BENSGALG00000043105Gallus gallus
 A6NCE7ENSG00000258102Homo sapiens
 Q9GZQ8ENSG00000140941Homo sapiens
 Q9CQV6ENSMUSG00000031812Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
map1lc3a / microtubule-associated protein 1 light chain 3 alpha / Q91VR7* / Q9H492* / Microtubule-associated proteins 1A/1B light chain 3A *ENSDARG0000003360983
map1lc3c / microtubule-associated protein 1 light chain 3 gamma / Q9BXW4*ENSDARG0000010052852
map1lc3cl / microtubule-associated protein 1 light chain 3 gamma, likeENSDARG0000007572748
gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSDARG0000002720036
zgc:92606 / Q8R3R8* / Q9H0R8* / GABARAPL1* / GABA type A receptor associated protein like 1* / Gamma-aminobutyric acid receptor-associated protein-like 1 *ENSDARG0000004097134
gabarapb / GABA(A) receptor-associated protein bENSDARG0000005208230
gabarapa / GABA(A) receptor-associated protein a / Q9DCD6* / O95166* / GABARAP* / GABA type A receptor-associated protein* / Gamma-aminobutyric acid receptor-associated protein *ENSDARG0000003555730


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005829 cytosol IDA


Pathways (from Reactome)
Pathway description
Macroautophagy
Pink/Parkin Mediated Mitophagy
TBC/RABGAPs
Receptor Mediated Mitophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000040822 fundc1 / Q6DH87 / FUN14 domain containing 1 / Q9DB70* / Q8IVP5* / FUN14 domain-containing protein 1 *  / complex / reaction
 ENSDARG00000023396 atg5 / ATG5 autophagy related 5 homolog (S. cerevisiae) / Q99J83* / Q9H1Y0* / autophagy related 5* / Autophagy protein 5 *  / complex / reaction
 ENSDARG00000075333 tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*  / reaction / complex






 

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