ENSG00000258102


Homo sapiens

Features
Gene ID: ENSG00000258102
  
Biological name :MAP1LC3B2
  
Synonyms : A6NCE7 / MAP1LC3B2 / microtubule associated protein 1 light chain 3 beta 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q24.22
Gene start: 116548105
Gene end: 116576448
  
Corresponding Affymetrix probe sets: 208785_s_at (Human Genome U133 Plus 2.0 Array)   234238_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450524
NCBI entrez gene - 643246     See in Manteia.
RefSeq - NM_001085481
RefSeq - XM_011538652
RefSeq Peptide - NP_001078950
swissprot - A6NCE7
Ensembl - ENSG00000258102
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 map1lc3bENSDARG00000101127Danio rerio
 MAP1LC3BENSGALG00000043105Gallus gallus
 Q9CQV6ENSMUSG00000031812Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9GZQ8 / MAP1LC3B / microtubule associated protein 1 light chain 3 betaENSG0000014094199
Q9H492 / MAP1LC3A / microtubule associated protein 1 light chain 3 alphaENSG0000010146071
Q9BXW4 / MAP1LC3C / microtubule associated protein 1 light chain 3 gammaENSG0000019776953
P60520 / GABARAPL2 / GABA type A receptor associated protein like 2ENSG0000003471335
Q9H0R8 / GABARAPL1 / GABA type A receptor associated protein like 1ENSG0000013911230
O95166 / GABARAP / GABA type A receptor-associated proteinENSG0000017029629


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr