ENSGALG00000043105


Gallus gallus

Features
Gene ID: ENSGALG00000043105
  
Biological name :MAP1LC3B
  
Synonyms : MAP1LC3B
  
Possible biological names infered from orthology : A6NCE7 / MAP1LC3B2 / microtubule associated protein 1 light chain 3 beta / microtubule associated protein 1 light chain 3 beta 2 / Microtubule-associated proteins 1A/1B light chain 3B / Q9CQV6 / Q9GZQ8
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 18027539
Gene end: 18036281
  
Corresponding Affymetrix probe sets: Gga.18142.1.A1_at (Chicken Array)   Gga.5912.2.S1_at (Chicken Array)   Gga.5912.2.S1_s_at (Chicken Array)   GgaAffx.11879.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045025
NCBI entrez gene - 427559     See in Manteia.
RefSeq - NM_001031461
RefSeq Peptide - NP_001026632
swissprot - Q5ZLF8
Ensembl - ENSGALG00000043105
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 map1lc3bENSDARG00000101127Danio rerio
 A6NCE7ENSG00000258102Homo sapiens
 Q9GZQ8ENSG00000140941Homo sapiens
 Q9CQV6ENSMUSG00000031812Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91VR7* / Q9H492* / MAP1LC3A* / microtubule associated protein 1 light chain 3 alpha* / Microtubule-associated proteins 1A/1B light chain 3A *ENSGALG0000003872182
MAP1LC3C / microtubule associated protein 1 light chain 3 gamma / Q9BXW4*ENSGALG0000001074154
GABARAPL2 / GABA type A receptor associated protein like 2 / P60520* / P60521* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSGALG0000000320837
GABARAPL1 / GABA type A receptor associated protein like 1 / Q8R3R8* / Q9H0R8* / Gamma-aminobutyric acid receptor-associated protein-like 1 *ENSGALG0000001472330


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0070257 positive regulation of mucus secretion IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0044754 autolysosome IEA


Pathways (from Reactome)
Pathway description
Macroautophagy
Pink/Parkin Mediated Mitophagy
TBC/RABGAPs
Receptor Mediated Mitophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002345 ATG12 / autophagy related 12 / O94817* / Q9CQY1* / Ubiquitin-like protein ATG12 *  / reaction / complex
 ENSGALG00000028187 E1BWM5 / FUNDC1 / FUN14 domain-containing protein 1 / Q8IVP5* / Q9DB70* / FUN14 domain containing 1*  / reaction / complex






 

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