ENSGALG00000002345


Gallus gallus

Features
Gene ID: ENSGALG00000002345
  
Biological name :ATG12
  
Synonyms : ATG12 / autophagy related 12
  
Possible biological names infered from orthology : O94817 / Q9CQY1 / Ubiquitin-like protein ATG12
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 72932224
Gene end: 72934699
  
Corresponding Affymetrix probe sets: Gga.11356.1.S1_s_at (Chicken Array)   Gga.7932.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003688
NCBI entrez gene - 427390     See in Manteia.
RefSeq - XM_004949628
RefSeq - XM_424963
swissprot - F1P145
Ensembl - ENSGALG00000002345
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg12ENSDARG00000069545Danio rerio
 ATG12ENSG00000145782Homo sapiens
 Atg12ENSMUSG00000032905Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007242  Ubiquitin-like protein Atg12
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0034045 phagophore assembly site membrane IEA
 cellular_componentGO:0034274 Atg12-Atg5-Atg16 complex IBA
 molecular_functionGO:0019776 Atg8 ligase activity IBA


Pathways (from Reactome)
Pathway description
Macroautophagy
Pink/Parkin Mediated Mitophagy
Receptor Mediated Mitophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001619 ATG16L1 / autophagy related 16 like 1 / Q676U5* / Q8C0J2* / autophagy related 16-like 1 (S. cerevisiae)*  / complex
 ENSGALG00000004557 WIPI2 / Q5ZHN3 / WD repeat domain phosphoinositide-interacting protein 2 / Q9Y4P8* / Q80W47* / WD repeat domain, phosphoinositide interacting 2*  / complex / reaction
 ENSGALG00000002345 ATG12 / autophagy related 12 / O94817* / Q9CQY1* / Ubiquitin-like protein ATG12 *  / complex
 ENSGALG00000028187 E1BWM5 / FUNDC1 / FUN14 domain-containing protein 1 / Q8IVP5* / Q9DB70* / FUN14 domain containing 1*  / complex / reaction
 ENSGALG00000027714 ATG10 / autophagy related 10 / Q9H0Y0*  / complex
 ENSGALG00000004932 ATG7 / Q5ZKY2 / Ubiquitin-like modifier-activating enzyme ATG7 / O95352* / Q9D906* / autophagy related 7*  / complex / reaction
 ENSGALG00000038721 Q91VR7* / Q9H492* / MAP1LC3A* / microtubule associated protein 1 light chain 3 alpha* / Microtubule-associated proteins 1A/1B light chain 3A *  / reaction / complex
 ENSGALG00000043105 MAP1LC3B / A6NCE7* / Q9CQV6* / Q9GZQ8* / MAP1LC3B2* / microtubule associated protein 1 light chain 3 beta* / microtubule associated protein 1 light chain 3 beta 2* / Microtubule-associated ...  / reaction / complex






 

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