ENSGALG00000001619


Gallus gallus

Features
Gene ID: ENSGALG00000001619
  
Biological name :ATG16L1
  
Synonyms : ATG16L1 / autophagy related 16 like 1
  
Possible biological names infered from orthology : autophagy related 16-like 1 (S. cerevisiae) / Q676U5 / Q8C0J2
  
Species: Gallus gallus
  
Chr. number: 9
Strand: 1
Band:
Gene start: 1162778
Gene end: 1181569
  
Corresponding Affymetrix probe sets: Gga.18826.1.S1_at (Chicken Array)   GgaAffx.1064.1.S1_s_at (Chicken Array)   GgaAffx.21700.1.S1_s_at (Chicken Array)   GgaAffx.24656.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002472
Ensembl peptide - ENSGALP00000052554
NCBI entrez gene - 424746     See in Manteia.
RefSeq - XM_422568
RefSeq - XM_015277204
RefSeq - XM_015277206
RefSeq - XM_003641751
RefSeq - XM_004936938
RefSeq - XM_004936939
RefSeq - XM_004936940
RefSeq - XM_004936942
RefSeq - XM_004936943
swissprot - E1BYR9
swissprot - A0A1D5PIC1
Ensembl - ENSGALG00000001619
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg16l1ENSDARG00000099430Danio rerio
 Q676U5ENSG00000085978Homo sapiens
 Q8C0J2ENSMUSG00000026289Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TAF5L / TATA-box binding protein associated factor 5 like / O75529* / Q91WQ5* / Mus musculus TATA-box binding protein associated factor 5 like (Taf5l), transcript variant 2, mRNA.*ENSGALG0000001109816
TAF5 / TATA-box binding protein associated factor 5 / Q15542*ENSGALG0000000824115


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR013923  Autophagy-related protein 16
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0034497 protein localization to phagophore assembly site IEA
 biological_processGO:0039689 negative stranded viral RNA replication IEA
 biological_processGO:0061739 protein lipidation involved in autophagosome assembly IEA
 biological_processGO:0098792 xenophagy IEA
 cellular_componentGO:0000421 autophagosome membrane IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005930 axoneme IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0051020 GTPase binding IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000015204 ATG3 / autophagy related 3 / Q9CPX6* / Q9NT62* / Ubiquitin-like-conjugating enzyme ATG3 *  / reaction
 ENSGALG00000001619 ATG16L1 / autophagy related 16 like 1 / Q676U5* / Q8C0J2* / autophagy related 16-like 1 (S. cerevisiae)*  / complex
 ENSGALG00000004557 WIPI2 / Q5ZHN3 / WD repeat domain phosphoinositide-interacting protein 2 / Q9Y4P8* / Q80W47* / WD repeat domain, phosphoinositide interacting 2*  / complex / reaction
 ENSGALG00000002345 ATG12 / autophagy related 12 / O94817* / Q9CQY1* / Ubiquitin-like protein ATG12 *  / complex






 

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