ENSG00000139112


Homo sapiens

Features
Gene ID: ENSG00000139112
  
Biological name :GABARAPL1
  
Synonyms : GABARAPL1 / GABA type A receptor associated protein like 1 / Q9H0R8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.2
Gene start: 10212458
Gene end: 10223130
  
Corresponding Affymetrix probe sets: 208868_s_at (Human Genome U133 Plus 2.0 Array)   208869_s_at (Human Genome U133 Plus 2.0 Array)   211458_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000445857
Ensembl peptide - ENSP00000486133
Ensembl peptide - ENSP00000446456
Ensembl peptide - ENSP00000446297
Ensembl peptide - ENSP00000266458
Ensembl peptide - ENSP00000411256
Ensembl peptide - ENSP00000437451
Ensembl peptide - ENSP00000438029
Ensembl peptide - ENSP00000439734
Ensembl peptide - ENSP00000441165
Ensembl peptide - ENSP00000443122
Ensembl peptide - ENSP00000443720
Ensembl peptide - ENSP00000444055
Ensembl peptide - ENSP00000444108
Ensembl peptide - ENSP00000444186
Ensembl peptide - ENSP00000444209
Ensembl peptide - ENSP00000444738
Ensembl peptide - ENSP00000445709
NCBI entrez gene - 23710     See in Manteia.
OMIM - 607420
RefSeq - NM_031412
RefSeq - XM_005253344
RefSeq Peptide - NP_113600
swissprot - F5GZY7
swissprot - A0A0G2JKT8
swissprot - G3V1T7
swissprot - Q9H0R8
swissprot - F5H007
swissprot - A0A024RAP5
swissprot - F5GX12
swissprot - F5GYD9
Ensembl - ENSG00000139112
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:92606ENSDARG00000040971Danio rerio
 GABARAPL1ENSGALG00000014723Gallus gallus
 Q8R3R8ENSMUSG00000030161Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O95166 / GABARAP / GABA type A receptor-associated proteinENSG0000017029686
P60520 / GABARAPL2 / GABA type A receptor associated protein like 2ENSG0000003471361
Q9BXW4 / MAP1LC3C / microtubule associated protein 1 light chain 3 gammaENSG0000019776938
A6NCE7 / MAP1LC3B2 / microtubule associated protein 1 light chain 3 beta 2ENSG0000025810232
Q9GZQ8 / MAP1LC3B / microtubule associated protein 1 light chain 3 betaENSG0000014094132
Q9H492 / MAP1LC3A / microtubule associated protein 1 light chain 3 alphaENSG0000010146032


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 biological_processGO:0016236 macroautophagy TAS
 biological_processGO:0097352 autophagosome maturation TAS
 cellular_componentGO:0000421 autophagosome membrane TAS
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IGI
 cellular_componentGO:0005776 autophagosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032590 dendrite membrane IEA
 cellular_componentGO:0032839 dendrite cytoplasm IEA
 cellular_componentGO:0044297 cell body IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030957 Tat protein binding IPI
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0048487 beta-tubulin binding ISS
 molecular_functionGO:0050811 GABA receptor binding ISS


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr