ENSG00000197769


Homo sapiens

Features
Gene ID: ENSG00000197769
  
Biological name :MAP1LC3C
  
Synonyms : MAP1LC3C / microtubule associated protein 1 light chain 3 gamma / Q9BXW4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q43
Gene start: 241995490
Gene end: 241999073
  
Corresponding Affymetrix probe sets: 221697_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000349785
NCBI entrez gene - 440738     See in Manteia.
OMIM - 609605
RefSeq - NM_001004343
RefSeq - XM_005273139
RefSeq Peptide - NP_001004343
swissprot - Q9BXW4
Ensembl - ENSG00000197769
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 map1lc3cENSDARG00000100528Danio rerio
 MAP1LC3CENSGALG00000010741Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9GZQ8 / MAP1LC3B / microtubule associated protein 1 light chain 3 betaENSG0000014094146
A6NCE7 / MAP1LC3B2 / microtubule associated protein 1 light chain 3 beta 2ENSG0000025810245
Q9H492 / MAP1LC3A / microtubule associated protein 1 light chain 3 alphaENSG0000010146043
P60520 / GABARAPL2 / GABA type A receptor associated protein like 2ENSG0000003471333
Q9H0R8 / GABARAPL1 / GABA type A receptor associated protein like 1ENSG0000013911231
O95166 / GABARAP / GABA type A receptor-associated proteinENSG0000017029630


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR027731  Microtubule-associated protein 1A/1B light chain 3C
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 biological_processGO:0009267 cellular response to starvation IDA
 biological_processGO:0016236 macroautophagy IDA
 biological_processGO:0035973 aggrephagy IMP
 biological_processGO:0097352 autophagosome maturation IDA
 cellular_componentGO:0000421 autophagosome membrane TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005776 autophagosome ISS
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031090 organelle membrane ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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