ENSDARG00000100528


Danio rerio

Features
Gene ID: ENSDARG00000100528
  
Biological name :map1lc3c
  
Synonyms : map1lc3c / microtubule-associated protein 1 light chain 3 gamma
  
Possible biological names infered from orthology : Q9BXW4
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 44798056
Gene end: 44801968
  
Corresponding Affymetrix probe sets: Dr.24663.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131293
NCBI entrez gene - 393268     See in Manteia.
swissprot - A0A0R4IEC4
swissprot - Q7ZWC0
ZFIN ID - ZDB-GENE-040426-1080
Ensembl - ENSDARG00000100528
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MAP1LC3CENSGALG00000010741Gallus gallus
 Q9BXW4ENSG00000197769Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
map1lc3cl / microtubule-associated protein 1 light chain 3 gamma, likeENSDARG0000007572758
map1lc3a / microtubule-associated protein 1 light chain 3 alpha / Q91VR7* / Q9H492* / Microtubule-associated proteins 1A/1B light chain 3A *ENSDARG0000003360954
map1lc3b / microtubule-associated protein 1 light chain 3 beta / Q9GZQ8* / Q9CQV6* / A6NCE7* / MAP1LC3B2* / Microtubule-associated proteins 1A/1B light chain 3B * / microtubule associated p...ENSDARG0000010112750
gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSDARG0000002720038
gabarapa / GABA(A) receptor-associated protein a / Q9DCD6* / O95166* / GABARAP* / GABA type A receptor-associated protein* / Gamma-aminobutyric acid receptor-associated protein *ENSDARG0000003555734
gabarapb / GABA(A) receptor-associated protein bENSDARG0000005208234
zgc:92606 / Q8R3R8* / Q9H0R8* / GABARAPL1* / GABA type A receptor associated protein like 1* / Gamma-aminobutyric acid receptor-associated protein-like 1 *ENSDARG0000004097134


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005829 cytosol IBA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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