ENSDARG00000035557


Danio rerio

Features
Gene ID: ENSDARG00000035557
  
Biological name :gabarapa
  
Synonyms : GABA(A) receptor-associated protein a / gabarapa
  
Possible biological names infered from orthology : GABARAP / GABA type A receptor-associated protein / Gamma-aminobutyric acid receptor-associated protein / O95166 / Q9DCD6
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 24059598
Gene end: 24061806
  
Corresponding Affymetrix probe sets: Dr.12845.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000051546
NCBI entrez gene - 326974     See in Manteia.
RefSeq - NM_001013260
RefSeq Peptide - NP_001013278
swissprot - Q6PSS4
ZFIN ID - ZDB-GENE-030131-5174
Ensembl - ENSDARG00000035557
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O95166ENSG00000170296Homo sapiens
 Q9DCD6ENSMUSG00000018567Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gabarapb / GABA(A) receptor-associated protein bENSDARG0000005208293
zgc:92606 / Q8R3R8* / Q9H0R8* / GABARAPL1* / GABA type A receptor associated protein like 1* / Gamma-aminobutyric acid receptor-associated protein-like 1 *ENSDARG0000004097157
gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *ENSDARG0000002720055
map1lc3cl / microtubule-associated protein 1 light chain 3 gamma, likeENSDARG0000007572736
map1lc3c / microtubule-associated protein 1 light chain 3 gamma / Q9BXW4*ENSDARG0000010052835
map1lc3a / microtubule-associated protein 1 light chain 3 alpha / Q91VR7* / Q9H492* / Microtubule-associated proteins 1A/1B light chain 3A *ENSDARG0000003360930
map1lc3b / microtubule-associated protein 1 light chain 3 beta / Q9GZQ8* / Q9CQV6* / A6NCE7* / MAP1LC3B2* / Microtubule-associated proteins 1A/1B light chain 3B * / microtubule associated p...ENSDARG0000010112730


Protein motifs (from Interpro)
Interpro ID Name
 IPR004241  Autophagy protein Atg8 ubiquitin-like
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0006995 cellular response to nitrogen starvation IBA
 biological_processGO:0007420 brain development IMP
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005829 cytosol IBA


Pathways (from Reactome)
Pathway description
Macroautophagy
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased length , abnormal
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 ZFA:0001114 head head hypoplastic , abnormal
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 ZFA:0001259 forebrain ventricle forebrain ventricle dilated , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch hypoplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000075333 tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*  / reaction / complex






 

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