ENSDARG00000078839


Danio rerio

Features
Gene ID: ENSDARG00000078839
  
Biological name :si:dkey-28o19.1
  
Synonyms : si:dkey-28o19.1
  
Possible biological names infered from orthology : leucine rich repeat transmembrane neuronal 4 / LRRTM4 / Mus musculus leucine rich repeat transmembrane neuronal 4 (Lrrtm4), transcript variant 4, mRNA. / Q80XG9 / Q86VH4
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 18291971
Gene end: 18492617
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000150474
Ensembl peptide - ENSDARP00000154781
Ensembl peptide - ENSDARP00000097998
Ensembl peptide - ENSDARP00000112859
Ensembl peptide - ENSDARP00000146705
Ensembl peptide - ENSDARP00000149807
NCBI entrez gene - 563710     See in Manteia.
swissprot - E7FFB2
swissprot - F1RE56
ZFIN ID - ZDB-GENE-091118-30
Ensembl - ENSDARG00000078839
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRTM4ENSGALG00000000476Gallus gallus
 LRRTM4ENSG00000176204Homo sapiens
 Lrrtm4ENSMUSG00000052581Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01102147.1 / LRRTM4* / Q86VH4* / leucine rich repeat transmembrane neuronal 4*ENSDARG0000010652258
lrrtm4l1 / leucine rich repeat transmembrane neuronal 4 like 1 / LRRTM4* / Q80XG9* / Q86VH4* / leucine rich repeat transmembrane neuronal 4* / Mus musculus leucine rich repeat transmembrane...ENSDARG0000008001548
lrrtm4l2 / leucine rich repeat transmembrane neuronal 4 like 2 / LRRTM4* / Q86VH4* / leucine rich repeat transmembrane neuronal 4*ENSDARG0000009938647
lrrtm1 / leucine rich repeat transmembrane neuronal 1 / Q86UE6* / Q8K377* / Leucine-rich repeat transmembrane neuronal protein 1 *ENSDARG0000005271334
lrrtm2 / leucine rich repeat transmembrane neuronal 2 / O43300* / Q8BGA3* / Leucine-rich repeat transmembrane neuronal protein 2 *ENSDARG0000007137431
chadla / chondroadherin-like a / CHADL* / Q6NUI6* / E9Q7T7* / chondroadherin like* / Chondroadherin-like protein *ENSDARG0000005516016
tril / TLR4 interactor with leucine-rich repeats / Q7L0X0*ENSDARG0000010079116
igfals / insulin-like growth factor binding protein, acid labile subunit / P35858*ENSDARG0000003783616
chadlb / chondroadherin-like b / CHADL* / Q6NUI6* / E9Q7T7* / chondroadherin like* / Chondroadherin-like protein *ENSDARG0000007590315
lrrc15 / leucine rich repeat containing 15 / Q80X72* / Q8TF66* / Leucine-rich repeat-containing protein 15 *ENSDARG0000007079214
nyx / nyctalopin / P83503* / Q9GZU5*ENSDARG0000006179114
si:dkey-182i3.11ENSDARG0000006927013
si:ch211-117l17.7 / GP5* / P40197* / glycoprotein V platelet*ENSDARG0000010021712
zgc:153913 / CPN2* / P22792* / carboxypeptidase N subunit 2*ENSDARG0000006351812
si:dkey-1j5.4ENSDARG0000007374711
chad / chondroadherin / O15335* / O55226*ENSDARG000000450718


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA


Pathways (from Reactome)
Pathway description
Neurexins and neuroligins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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