ENSDARG00000052713


Danio rerio

Features
Gene ID: ENSDARG00000052713
  
Biological name :lrrtm1
  
Synonyms : leucine rich repeat transmembrane neuronal 1 / lrrtm1
  
Possible biological names infered from orthology : Leucine-rich repeat transmembrane neuronal protein 1 / Q86UE6 / Q8K377
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 42776553
Gene end: 42779075
  
Corresponding Affymetrix probe sets: Dr.12811.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117976
Ensembl peptide - ENSDARP00000153356
NCBI entrez gene - 570385     See in Manteia.
swissprot - B8JKM0
ZFIN ID - ZDB-GENE-050506-80
Ensembl - ENSDARG00000052713
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRTM1ENSGALG00000015967Gallus gallus
 LRRTM1ENSG00000162951Homo sapiens
 Lrrtm1ENSMUSG00000060780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrrtm2 / leucine rich repeat transmembrane neuronal 2 / O43300* / Q8BGA3* / Leucine-rich repeat transmembrane neuronal protein 2 *ENSDARG0000007137446
si:dkey-28o19.1 / LRRTM4* / Q80XG9* / Q86VH4* / leucine rich repeat transmembrane neuronal 4* / Mus musculus leucine rich repeat transmembrane neuronal 4 (Lrrtm4), transcript variant 4, mRNA.*ENSDARG0000007883941
CABZ01102147.1 / LRRTM4* / Q86VH4* / leucine rich repeat transmembrane neuronal 4*ENSDARG0000010652240
lrrtm4l1 / leucine rich repeat transmembrane neuronal 4 like 1 / LRRTM4* / Q80XG9* / Q86VH4* / leucine rich repeat transmembrane neuronal 4* / Mus musculus leucine rich repeat transmembrane...ENSDARG0000008001540
lrrtm4l2 / leucine rich repeat transmembrane neuronal 4 like 2 / LRRTM4* / Q86VH4* / leucine rich repeat transmembrane neuronal 4*ENSDARG0000009938639
chadla / chondroadherin-like a / CHADL* / Q6NUI6* / E9Q7T7* / chondroadherin like* / Chondroadherin-like protein *ENSDARG0000005516020
chadlb / chondroadherin-like b / CHADL* / Q6NUI6* / E9Q7T7* / chondroadherin like* / Chondroadherin-like protein *ENSDARG0000007590319
igfals / insulin-like growth factor binding protein, acid labile subunit / P35858*ENSDARG0000003783619
tril / TLR4 interactor with leucine-rich repeats / Q7L0X0*ENSDARG0000010079118
nyx / nyctalopin / P83503* / Q9GZU5*ENSDARG0000006179117
lrrc15 / leucine rich repeat containing 15 / Q80X72* / Q8TF66* / Leucine-rich repeat-containing protein 15 *ENSDARG0000007079217
si:ch211-117l17.7 / GP5* / P40197* / glycoprotein V platelet*ENSDARG0000010021716
si:dkey-182i3.11ENSDARG0000006927016
zgc:153913 / CPN2* / P22792* / carboxypeptidase N subunit 2*ENSDARG0000006351816
si:dkey-1j5.4ENSDARG0000007374713
chad / chondroadherin / O15335* / O55226*ENSDARG000000450719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IDA


Pathways (from Reactome)
Pathway description
Neurexins and neuroligins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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