ENSGALG00000015967


Gallus gallus

Features
Gene ID: ENSGALG00000015967
  
Biological name :LRRTM1
  
Synonyms : leucine rich repeat transmembrane neuronal 1 / LRRTM1
  
Possible biological names infered from orthology : Leucine-rich repeat transmembrane neuronal protein 1 / Q86UE6 / Q8K377
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 88132469
Gene end: 88134034
  
Corresponding Affymetrix probe sets: Gga.5279.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025682
NCBI entrez gene - 771502     See in Manteia.
RefSeq - XM_015285928
swissprot - E1BX56
Ensembl - ENSGALG00000015967
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrrtm1ENSDARG00000052713Danio rerio
 LRRTM1ENSG00000162951Homo sapiens
 Lrrtm1ENSMUSG00000060780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRRTM3 / leucine rich repeat transmembrane neuronal 3 / Q86VH5* / Q8BZ81* / Leucine-rich repeat transmembrane neuronal protein 3 *ENSGALG0000000286445
LRRTM4 / leucine rich repeat transmembrane neuronal 4 / Q80XG9* / Q86VH4* / Mus musculus leucine rich repeat transmembrane neuronal 4 (Lrrtm4), transcript variant 4, mRNA.*ENSGALG0000000047645
LRRTM2 / leucine rich repeat transmembrane neuronal 2 / O43300* / Q8BGA3* / Leucine-rich repeat transmembrane neuronal protein 2 *ENSGALG0000000245534
TRIL / TLR4 interactor with leucine rich repeats / Q7L0X0* / Q9DBY4*ENSGALG0000001114521
IGFALS / insulin like growth factor binding protein acid labile subunit / P35858*ENSGALG0000000232520
GP5 / glycoprotein V platelet / P40197*ENSGALG0000004512519
LRRC15 / leucine rich repeat containing 15 / Q80X72* / Q8TF66* / Leucine-rich repeat-containing protein 15 *ENSGALG0000004646118
CPN2 / carboxypeptidase N subunit 2 / P22792* / Q9DBB9*ENSGALG0000004577618
NYX / nyctalopin / P83503* / Q9GZU5*ENSGALG0000001622818
CHADL / chondroadherin like / E9Q7T7* / Q6NUI6* / Chondroadherin-like protein *ENSGALG0000001197018
ENSGALG0000004231813
CHAD / chondroadherin / O15335* / O55226*ENSGALG000000197618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002091 negative regulation of receptor internalization IEA
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0035418 protein localization to synapse IEA
 biological_processGO:0035640 exploration behavior IEA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 biological_processGO:0060291 long-term synaptic potentiation IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA


Pathways (from Reactome)
Pathway description
Neurexins and neuroligins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr