ENSDARG00000090585


Danio rerio

Features
Gene ID: ENSDARG00000090585
  
Biological name :gpc1b
  
Synonyms : glypican 1b / gpc1b
  
Possible biological names infered from orthology : glypican 1 / GPC1 / P35052 / Q9QZF2
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 46032678
Gene end: 46184590
  
Corresponding Affymetrix probe sets: Dr.26461.1.S1_at (Zebrafish Array)   NM_201020_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000110282
Ensembl peptide - ENSDARP00000149361
NCBI entrez gene - 393995     See in Manteia.
RefSeq - NM_201020
RefSeq Peptide - NP_957314
swissprot - F1QVG5
ZFIN ID - ZDB-GENE-040426-1306
Ensembl - ENSDARG00000090585
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GPC1ENSGALG00000040316Gallus gallus
 GPC1ENSG00000063660Homo sapiens
 Gpc1ENSMUSG00000034220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gpc1a / glypican 1a / GPC1* / P35052* / Q9QZF2* / glypican 1*ENSDARG0000001934153
gpc6a / glypican 6a / GPC6* / Q9Y625* / glypican 6*ENSDARG0000010315642
gpc4 / glypican 4 / O75487* / P51655*ENSDARG0000001547239
gpc6b / glypican 6b / GPC6* / Q9Y625* / glypican 6*ENSDARG0000010421938
gpc5a / glypican 5a / GPC5* / P78333* / glypican 5*ENSDARG0000010364722
gpc5b / glypican 5bENSDARG0000002458822
gpc2 / glypican 2 / Q8N158*ENSDARG0000010421721
gpc3 / glypican 3 / P51654* / Q8CFZ4*ENSDARG0000003219920
CU467828.1ENSDARG0000007408217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001863  Glypican
 IPR015502  Glypican-1
 IPR019803  Glypican, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0009966 regulation of signal transduction IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IEA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Cell surface interactions at the vascular wall
Signaling by ROBO receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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