ENSGALG00000040316


Gallus gallus

Features
Gene ID: ENSGALG00000040316
  
Biological name :GPC1
  
Synonyms : glypican 1 / GPC1
  
Possible biological names infered from orthology : P35052 / Q9QZF2
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 2684716
Gene end: 2847256
  
Corresponding Affymetrix probe sets: Gga.18434.1.S1_s_at (Chicken Array)   Gga.5439.1.S1_at (Chicken Array)   GgaAffx.1557.1.S1_at (Chicken Array)   GgaAffx.4193.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056235
Ensembl peptide - ENSGALP00000047684
NCBI entrez gene - 424770     See in Manteia.
RefSeq - NM_001305060
RefSeq Peptide - NP_001291989
swissprot - F1P150
swissprot - A0A1D5PTI7
Ensembl - ENSGALG00000040316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gpc1aENSDARG00000019341Danio rerio
 gpc1bENSDARG00000090585Danio rerio
 GPC1ENSG00000063660Homo sapiens
 Gpc1ENSMUSG00000034220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GPC4 / glypican 4 / O75487* / P51655*ENSGALG0000000608047
GPC6 / glypican 6 / Q9R087* / Q9Y625*ENSGALG0000001690045
GPC5 / glypican 5 / P78333* / Q8CAL5*ENSGALG0000001690222
GPC3 / glypican 3 / P51654* / Q8CFZ4*ENSGALG0000000608722
ENSGALG0000000672420


Protein motifs (from Interpro)
Interpro ID Name
 IPR001863  Glypican
 IPR015502  Glypican-1
 IPR019803  Glypican, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009966 regulation of signal transduction IEA
 biological_processGO:0030200 heparan sulfate proteoglycan catabolic process IEA
 biological_processGO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:1902723 negative regulation of skeletal muscle satellite cell proliferation ISS
 biological_processGO:1902724 positive regulation of skeletal muscle satellite cell proliferation ISS
 biological_processGO:1902725 negative regulation of satellite cell differentiation ISS
 biological_processGO:1902726 positive regulation of skeletal muscle satellite cell differentiation ISS
 biological_processGO:2001016 positive regulation of skeletal muscle cell differentiation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0017134 fibroblast growth factor binding IEA
 molecular_functionGO:0043236 laminin binding IEA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Signaling by ROBO receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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