ENSDARG00000100481


Danio rerio

Features
Gene ID: ENSDARG00000100481
  
Biological name :smg6
  
Synonyms : smg6 / SMG6 nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology : P61406 / Q86US8 / Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 35584647
Gene end: 35613752
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140752
NCBI entrez gene - 100334020     See in Manteia.
swissprot - A0A0R4IZ84
ZFIN ID - ZDB-GENE-081107-52
Ensembl - ENSDARG00000100481
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMG6ENSGALG00000003108Gallus gallus
 SMG6ENSG00000070366Homo sapiens
 Smg6ENSMUSG00000038290Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smg5 / SMG5 nonsense mediated mRNA decay factor / Q6ZPY2* / Q9UPR3* / Protein SMG5 *ENSDARG0000004148111
smg7 / SMG7 nonsense mediated mRNA decay factor / Q5RJH6* / Q92540* / Protein SMG7 *ENSDARG0000006076710


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR018834  DNA/RNA-binding domain, Est1-type
 IPR019458  Telomerase activating protein Est1
 IPR029060  PIN-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IDA
 biological_processGO:0043009 chordate embryonic development IMP


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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