ENSDARG00000101710


Danio rerio

Features
Gene ID: ENSDARG00000101710
  
Biological name :arid1aa
  
Synonyms : arid1aa / AT rich interactive domain 1Aa (SWI-like)
  
Possible biological names infered from orthology : A2BH40 / ARID1A / AT-rich interaction domain 1A / AT-rich interactive domain-containing protein 1A / O14497
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 33953644
Gene end: 33986796
  
Corresponding Affymetrix probe sets: Dr.2540.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134422
Ensembl peptide - ENSDARP00000141144
NCBI entrez gene - 100141358     See in Manteia.
RefSeq - XM_021466949
RefSeq - XM_021466950
swissprot - A0A0R4IVD0
swissprot - A0A0R4IKJ3
ZFIN ID - ZDB-GENE-080220-35
Ensembl - ENSDARG00000101710
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000046659Gallus gallus
 ENSGALG00000045030Gallus gallus
 ENSGALG00000029316Gallus gallus
 ENSGALG00000043936Gallus gallus
 ENSGALG00000044001Gallus gallus
 ARID1AENSG00000117713Homo sapiens
 A2BH40ENSMUSG00000007880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arid1ab / AT rich interactive domain 1Ab (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010189162
arid1b / AT rich interactive domain 1B (SWI1-like) / Q8NFD5* / E9Q4N7* / AT-rich interaction domain 1B* / AT-rich interactive domain-containing protein 1B *ENSDARG0000009250341
arid3b / AT rich interactive domain 3B (BRIGHT-like) / Q9Z1N7* / Q8IVW6* / AT-rich interaction domain 3B* / AT-rich interactive domain-containing protein 3B *ENSDARG000001040345
A2BEA6 / arid3c / AT rich interactive domain 3C (BRIGHT-like) / A6NKF2* / A6PWV5* / AT-rich interaction domain 3C* / AT-rich interactive domain-containing protein 3C *ENSDARG000000677295
arid3a / AT rich interactive domain 3A (BRIGHT-like) / Q99856* / AT-rich interaction domain 3A*ENSDARG000000708434


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR011989  Armadillo-like helical
 IPR021906  SWI/SNF-like complex subunit BAF250/Osa
 IPR030094  SWI/SNF-like complex subunit BAF250a
 IPR033388  SWI/SNF-like complex subunit BAF250, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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