ENSDARG00000092503


Danio rerio

Features
Gene ID: ENSDARG00000092503
  
Biological name :arid1b
  
Synonyms : arid1b / AT rich interactive domain 1B (SWI1-like)
  
Possible biological names infered from orthology : AT-rich interaction domain 1B / AT-rich interactive domain-containing protein 1B / E9Q4N7 / Q8NFD5
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 4897996
Gene end: 5052838
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000146446
Ensembl peptide - ENSDARP00000119606
Ensembl peptide - ENSDARP00000139784
NCBI entrez gene - 569589     See in Manteia.
RefSeq - NM_001346214
RefSeq - NM_001346215
RefSeq Peptide - NP_001333143
RefSeq Peptide - NP_001333144
swissprot - Q5RGW7
swissprot - A0A0R4ISW4
ZFIN ID - ZDB-GENE-030131-4459
Ensembl - ENSDARG00000092503
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID1BENSGALG00000013683Gallus gallus
 ARID1BENSG00000049618Homo sapiens
 Arid1bENSMUSG00000069729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arid1aa / AT rich interactive domain 1Aa (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010171044
arid1ab / AT rich interactive domain 1Ab (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010189141
arid3a / AT rich interactive domain 3A (BRIGHT-like) / Q99856* / AT-rich interaction domain 3A*ENSDARG000000708435
arid3b / AT rich interactive domain 3B (BRIGHT-like) / Q9Z1N7* / Q8IVW6* / AT-rich interaction domain 3B* / AT-rich interactive domain-containing protein 3B *ENSDARG000001040345
A2BEA6 / arid3c / AT rich interactive domain 3C (BRIGHT-like) / A6NKF2* / A6PWV5* / AT-rich interaction domain 3C* / AT-rich interactive domain-containing protein 3C *ENSDARG000000677295


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021906  SWI/SNF-like complex subunit BAF250/Osa
 IPR033388  SWI/SNF-like complex subunit BAF250, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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