ENSMUSG00000069729


Mus musculus

Features
Gene ID: ENSMUSG00000069729
  
Biological name :Arid1b
  
Synonyms : Arid1b / AT-rich interactive domain-containing protein 1B / E9Q4N7
  
Possible biological names infered from orthology : AT-rich interaction domain 1B / Q8NFD5
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A1
Gene start: 4994332
Gene end: 5347656
  
Corresponding Affymetrix probe sets: 10441400 (MoGene1.0st)   1455979_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000090398
Ensembl peptide - ENSMUSP00000111465
Ensembl peptide - ENSMUSP00000111463
NCBI entrez gene - 239985     See in Manteia.
MGI - MGI:1926129
RefSeq - XM_006523223
RefSeq - NM_001085355
RefSeq - XM_006523221
RefSeq - XM_006523222
RefSeq Peptide - NP_001078824
swissprot - E9Q4N6
swissprot - E9Q4N7
swissprot - E9Q6R4
Ensembl - ENSMUSG00000069729
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid1bENSDARG00000092503Danio rerio
 ARID1BENSGALG00000013683Gallus gallus
 ARID1BENSG00000049618Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A2BH40 / Arid1a / AT-rich interactive domain-containing protein 1A / O14497* / AT-rich interaction domain 1A*ENSMUSG0000000788052
Arid3b / Q9Z1N7 / AT-rich interactive domain-containing protein 3B / Q8IVW6* / AT-rich interaction domain 3B*ENSMUSG000000046617
Arid3a / Q62431 / AT-rich interactive domain-containing protein 3A / Q99856* / AT-rich interaction domain 3A*ENSMUSG000000195646
A6PWV5 / Arid3c / AT-rich interactive domain-containing protein 3C / A6NKF2* / AT-rich interaction domain 3C*ENSMUSG000000662245


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021906  SWI/SNF-like complex subunit BAF250/Osa
 IPR033388  SWI/SNF-like complex subunit BAF250, C-terminal
 IPR036431  ARID DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IC
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007270 neuron-neuron synaptic transmission IMP
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0060996 dendritic spine development IMP
 biological_processGO:0097026 dendritic cell dendrite assembly IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016514 SWI/SNF complex ISO
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 cellular_componentGO:0071565 nBAF complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0008040 decreased NK T cell number "reduced number of the distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments" [GO:0001865]
Show

Allelic Composition: Apptm1b(KOMP)Wtsi/Apptm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Apptm1b(KOMP)Wtsi/Ics

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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