ENSGALG00000013683


Gallus gallus

Features
Gene ID: ENSGALG00000013683
  
Biological name :ARID1B
  
Synonyms : ARID1B / AT-rich interaction domain 1B
  
Possible biological names infered from orthology : AT-rich interactive domain-containing protein 1B / E9Q4N7 / Q8NFD5
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 51335816
Gene end: 51624319
  
Corresponding Affymetrix probe sets: Gga.10975.1.S1_s_at (Chicken Array)   Gga.10975.2.S1_at (Chicken Array)   Gga.5509.1.S1_at (Chicken Array)   GgaAffx.24250.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022208
NCBI entrez gene - 421650     See in Manteia.
RefSeq - XM_015284231
RefSeq - XM_015284232
RefSeq - XM_015284233
RefSeq - XM_015284234
RefSeq - XM_015284235
RefSeq - XM_015284236
RefSeq - XM_015284237
RefSeq - XM_015284238
RefSeq - XM_015284230
swissprot - F1P479
Ensembl - ENSGALG00000013683
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid1bENSDARG00000092503Danio rerio
 ARID1BENSG00000049618Homo sapiens
 Arid1bENSMUSG00000069729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG0000002931660
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG0000004665910
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000440019
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000439369
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000450309
ARID3B / AT-rich interaction domain 3B / Q8IVW6* / Q9Z1N7* / AT-rich interactive domain-containing protein 3B *ENSGALG000000013767
ARID3A / AT-rich interaction domain 3A / Q62431* / Q99856* / AT-rich interactive domain-containing protein 3A *ENSGALG000000262317
ARID3C / AT-rich interaction domain 3C / A6NKF2* / A6PWV5* / AT-rich interactive domain-containing protein 3C *ENSGALG000000058395


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021906  SWI/SNF-like complex subunit BAF250/Osa
 IPR033388  SWI/SNF-like complex subunit BAF250, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0007270 neuron-neuron synaptic transmission IEA
 biological_processGO:0060996 dendritic spine development IEA
 biological_processGO:0097026 dendritic cell dendrite assembly IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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