ENSGALG00000001376


Gallus gallus

Features
Gene ID: ENSGALG00000001376
  
Biological name :ARID3B
  
Synonyms : ARID3B / AT-rich interaction domain 3B
  
Possible biological names infered from orthology : AT-rich interactive domain-containing protein 3B / Q8IVW6 / Q9Z1N7
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 2418109
Gene end: 2443420
  
Corresponding Affymetrix probe sets: GgaAffx.920.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002095
NCBI entrez gene - 100859297     See in Manteia.
RefSeq - NM_001256157
RefSeq - XM_015278743
RefSeq Peptide - NP_001243086
swissprot - F1NL47
Ensembl - ENSGALG00000001376
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid3bENSDARG00000104034Danio rerio
 ARID3BENSG00000179361Homo sapiens
 Arid3bENSMUSG00000004661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID3A / AT-rich interaction domain 3A / Q62431* / Q99856* / AT-rich interactive domain-containing protein 3A *ENSGALG0000002623142
ARID3C / AT-rich interaction domain 3C / A6NKF2* / A6PWV5* / AT-rich interactive domain-containing protein 3C *ENSGALG0000000583935
ARID1B / AT-rich interaction domain 1B / E9Q4N7* / Q8NFD5* / AT-rich interactive domain-containing protein 1B *ENSGALG0000001368324
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG0000002931623
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000440014
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000450304
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000466594
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000439363


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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