ENSGALG00000005839


Gallus gallus

Features
Gene ID: ENSGALG00000005839
  
Biological name :ARID3C
  
Synonyms : ARID3C / AT-rich interaction domain 3C
  
Possible biological names infered from orthology : A6NKF2 / A6PWV5 / AT-rich interactive domain-containing protein 3C
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 7926358
Gene end: 7938550
  
Corresponding Affymetrix probe sets: GgaAffx.3649.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009365
Ensembl peptide - ENSGALP00000053113
NCBI entrez gene - 100858693     See in Manteia.
RefSeq - XM_015277451
swissprot - A0A1D5PJW5
swissprot - F1NAK8
Ensembl - ENSGALG00000005839
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A2BEA6ENSDARG00000067729Danio rerio
 A6NKF2ENSG00000205143Homo sapiens
 A6PWV5ENSMUSG00000066224Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID3A / AT-rich interaction domain 3A / Q62431* / Q99856* / AT-rich interactive domain-containing protein 3A *ENSGALG0000002623162
ARID3B / AT-rich interaction domain 3B / Q8IVW6* / Q9Z1N7* / AT-rich interactive domain-containing protein 3B *ENSGALG0000000137657
ARID1B / AT-rich interaction domain 1B / E9Q4N7* / Q8NFD5* / AT-rich interactive domain-containing protein 1B *ENSGALG0000001368328
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG0000002931625
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000466596
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000440016
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000450306
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000439365


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0045121 membrane raft IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr