ENSDARG00000067729


Danio rerio

Features
Gene ID: ENSDARG00000067729
  
Biological name :arid3c
  
Synonyms : A2BEA6 / arid3c / AT rich interactive domain 3C (BRIGHT-like)
  
Possible biological names infered from orthology : A6NKF2 / A6PWV5 / AT-rich interaction domain 3C / AT-rich interactive domain-containing protein 3C
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 41322783
Gene end: 41447128
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000088317
NCBI entrez gene - 569444     See in Manteia.
swissprot - A2BEA6
ZFIN ID - ZDB-GENE-060526-12
Ensembl - ENSDARG00000067729
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID3CENSGALG00000005839Gallus gallus
 A6NKF2ENSG00000205143Homo sapiens
 A6PWV5ENSMUSG00000066224Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arid3a / AT rich interactive domain 3A (BRIGHT-like) / Q99856* / AT-rich interaction domain 3A*ENSDARG0000007084345
arid3b / AT rich interactive domain 3B (BRIGHT-like) / Q9Z1N7* / Q8IVW6* / AT-rich interaction domain 3B* / AT-rich interactive domain-containing protein 3B *ENSDARG0000010403441
arid1aa / AT rich interactive domain 1Aa (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010171021
arid1ab / AT rich interactive domain 1Ab (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010189120
arid1b / AT rich interactive domain 1B (SWI1-like) / Q8NFD5* / E9Q4N7* / AT-rich interaction domain 1B* / AT-rich interactive domain-containing protein 1B *ENSDARG0000009250319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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