ENSDARG00000104034


Danio rerio

Features
Gene ID: ENSDARG00000104034
  
Biological name :arid3b
  
Synonyms : arid3b / AT rich interactive domain 3B (BRIGHT-like)
  
Possible biological names infered from orthology : AT-rich interaction domain 3B / AT-rich interactive domain-containing protein 3B / Q8IVW6 / Q9Z1N7
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 28987957
Gene end: 29074064
  
Corresponding Affymetrix probe sets: Dr.17718.2.S1_at (Zebrafish Array)   Dr.19729.1.S1_at (Zebrafish Array)   NM_001083002_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000133591
Ensembl peptide - ENSDARP00000141926
NCBI entrez gene - 571249     See in Manteia.
RefSeq - NM_001083002
RefSeq - XM_005163128
RefSeq - XM_009298079
RefSeq Peptide - NP_001076471
swissprot - A0A0R4IZF6
swissprot - A0A0R4IJ24
ZFIN ID - ZDB-GENE-070209-182
Ensembl - ENSDARG00000104034
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARID3BENSGALG00000001376Gallus gallus
 ARID3BENSG00000179361Homo sapiens
 Arid3bENSMUSG00000004661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A2BEA6 / arid3c / AT rich interactive domain 3C (BRIGHT-like) / A6NKF2* / A6PWV5* / AT-rich interaction domain 3C* / AT-rich interactive domain-containing protein 3C *ENSDARG0000006772938
arid3a / AT rich interactive domain 3A (BRIGHT-like) / Q99856* / AT-rich interaction domain 3A*ENSDARG0000007084334
arid1aa / AT rich interactive domain 1Aa (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010171019
arid1ab / AT rich interactive domain 1Ab (SWI-like) / O14497* / ARID1A* / A2BH40* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSDARG0000010189118
arid1b / AT rich interactive domain 1B (SWI1-like) / Q8NFD5* / E9Q4N7* / AT-rich interaction domain 1B* / AT-rich interactive domain-containing protein 1B *ENSDARG0000009250317


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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