ENSMUSG00000066224


Mus musculus

Features
Gene ID: ENSMUSG00000066224
  
Biological name :Arid3c
  
Synonyms : A6PWV5 / Arid3c / AT-rich interactive domain-containing protein 3C
  
Possible biological names infered from orthology : A6NKF2 / AT-rich interaction domain 3C
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: A5
Gene start: 41723836
Gene end: 41731142
  
Corresponding Affymetrix probe sets: 10512301 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000081748
Ensembl peptide - ENSMUSP00000127678
Ensembl peptide - ENSMUSP00000124563
Ensembl peptide - ENSMUSP00000116411
NCBI entrez gene - 550619     See in Manteia.
MGI - MGI:3650624
RefSeq - XM_011250077
RefSeq - NM_001017362
RefSeq - NM_001252622
RefSeq Peptide - NP_001239551
RefSeq Peptide - NP_001017362
swissprot - E0CY10
swissprot - A6PWV5
swissprot - B7ZP08
Ensembl - ENSMUSG00000066224
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A2BEA6ENSDARG00000067729Danio rerio
 ARID3CENSGALG00000005839Gallus gallus
 A6NKF2ENSG00000205143Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arid3a / Q62431 / AT-rich interactive domain-containing protein 3A / Q99856* / AT-rich interaction domain 3A*ENSMUSG0000001956448
Arid3b / Q9Z1N7 / AT-rich interactive domain-containing protein 3B / Q8IVW6* / AT-rich interaction domain 3B*ENSMUSG0000000466146
Arid1b / E9Q4N7 / AT-rich interactive domain-containing protein 1B / Q8NFD5* / AT-rich interaction domain 1B*ENSMUSG0000006972926
A2BH40 / Arid1a / AT-rich interactive domain-containing protein 1A / O14497* / AT-rich interaction domain 1A*ENSMUSG0000000788023


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR023334  REKLES domain
 IPR036431  ARID DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IGI
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0045121 membrane raft IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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