ENSDARG00000104311


Danio rerio

Features
Gene ID: ENSDARG00000104311
  
Biological name :scmh1
  
Synonyms : scmh1 / Scm polycomb group protein homolog 1
  
Possible biological names infered from orthology : Polycomb protein SCMH1 / Q8K214 / Q96GD3
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 35555029
Gene end: 35586411
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131127
Ensembl peptide - ENSDARP00000148659
Ensembl peptide - ENSDARP00000135816
Ensembl peptide - ENSDARP00000132543
Ensembl peptide - ENSDARP00000131445
NCBI entrez gene - 100037329     See in Manteia.
RefSeq - NM_001089484
RefSeq Peptide - NP_001082953
swissprot - A0A0R4IED9
swissprot - A3KNV9
swissprot - A0A0R4IAY8
swissprot - A0A0R4ILL4
ZFIN ID - ZDB-GENE-070410-82
Ensembl - ENSDARG00000104311
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCMH1ENSGALG00000000672Gallus gallus
 SCMH1ENSG00000010803Homo sapiens
 Scmh1ENSMUSG00000000085Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scml2 / Scm polycomb group protein like 2 / Q9UQR0*ENSDARG0000001294961
l3mbtl1b / l(3)mbt-like 1b (Drosophila)ENSDARG0000007434639
sfmbt2 / Scm like with four mbt domains 2 / Q5VUG0*ENSDARG0000004551938
l3mbtl3 / l(3)mbt-like 3 (Drosophila) / Q8BLB7* / Q96JM7* / L3MBTL3, histone methyl-lysine binding protein* / Mus musculus L3MBTL3 histone methyl-lysine binding protein (L3mbtl3), transcrip...ENSDARG0000002598333
SFMBT1 / Scm like with four mbt domains 1 / Q9UHJ3*ENSDARG0000010983030
l3mbtl2 / l(3)mbt-like 2 (Drosophila) / P59178* / Q969R5* / L3MBTL2, polycomb repressive complex 1 subunit* / Lethal(3)malignant brain tumor-like protein 2 *ENSDARG0000005607930
mbtd1 / mbt domain containing 1 / Q05BQ5* / Q6P5G3* / MBT domain-containing protein 1 *ENSDARG0000006086827
l3mbtl1a / l(3)mbt-like 1a (Drosophila) / A2A5N8* / Q9Y468* / L3MBTL1* / Lethal(3)malignant brain tumor-like protein 1 * / L3MBTL1, histone methyl-lysine binding protein*ENSDARG0000001482825
scml4 / Scm polycomb group protein like 4 / Q80VG1* / Q8N228*ENSDARG000000172668


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR004092  Mbt repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR021987  SLED domain
 IPR033763  Polycomb group protein, RNA binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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