ENSDARG00000012949


Danio rerio

Features
Gene ID: ENSDARG00000012949
  
Biological name :scml2
  
Synonyms : scml2 / Scm polycomb group protein like 2
  
Possible biological names infered from orthology : Q9UQR0
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 30106182
Gene end: 30158609
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000133933
Ensembl peptide - ENSDARP00000016700
Ensembl peptide - ENSDARP00000129241
Ensembl peptide - ENSDARP00000129583
NCBI entrez gene - 559561     See in Manteia.
RefSeq - XM_009306121
RefSeq - XM_009306123
RefSeq - XM_017358343
RefSeq - XM_003199502
RefSeq - XM_009306122
swissprot - X1WH72
swissprot - A0A0R4IIV3
swissprot - F1RDU3
ZFIN ID - ZDB-GENE-130530-546
Ensembl - ENSDARG00000012949
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCML2ENSGALG00000016537Gallus gallus
 SCML2ENSG00000102098Homo sapiens
 Scml2ENSMUSG00000000037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scml4 / Scm polycomb group protein like 4 / Q80VG1* / Q8N228*ENSDARG0000001726622
SFMBT1 / Scm like with four mbt domains 1 / Q9UHJ3*ENSDARG0000010983022
sfmbt2 / Scm like with four mbt domains 2 / Q5VUG0*ENSDARG0000004551921
l3mbtl1b / l(3)mbt-like 1b (Drosophila)ENSDARG0000007434619
l3mbtl3 / l(3)mbt-like 3 (Drosophila) / Q8BLB7* / Q96JM7* / L3MBTL3, histone methyl-lysine binding protein* / Mus musculus L3MBTL3 histone methyl-lysine binding protein (L3mbtl3), transcrip...ENSDARG0000002598318
l3mbtl1a / l(3)mbt-like 1a (Drosophila) / A2A5N8* / Q9Y468* / L3MBTL1* / Lethal(3)malignant brain tumor-like protein 1 * / L3MBTL1, histone methyl-lysine binding protein*ENSDARG0000001482816
l3mbtl2 / l(3)mbt-like 2 (Drosophila) / P59178* / Q969R5* / L3MBTL2, polycomb repressive complex 1 subunit* / Lethal(3)malignant brain tumor-like protein 2 *ENSDARG0000005607913
mbtd1 / mbt domain containing 1 / Q05BQ5* / Q6P5G3* / MBT domain-containing protein 1 *ENSDARG0000006086812
scmh1 / Scm polycomb group protein homolog 1 / Q8K214* / Q96GD3* / Polycomb protein SCMH1 *ENSDARG0000010431110


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR004092  Mbt repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR021987  SLED domain
 IPR033763  Polycomb group protein, RNA binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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