ENSGALG00000000672


Gallus gallus

Features
Gene ID: ENSGALG00000000672
  
Biological name :SCMH1
  
Synonyms : SCMH1 / Scm polycomb group protein homolog 1
  
Possible biological names infered from orthology : Polycomb protein SCMH1 / Q8K214 / Q96GD3
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 1265740
Gene end: 1281882
  
Corresponding Affymetrix probe sets: GgaAffx.424.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000000947
Ensembl peptide - ENSGALP00000055293
Ensembl peptide - ENSGALP00000052304
Ensembl peptide - ENSGALP00000047279
Ensembl peptide - ENSGALP00000044704
NCBI entrez gene - 768916     See in Manteia.
RefSeq - XM_015297576
RefSeq - XM_015297577
RefSeq - XM_015297578
swissprot - A0A1D5P3M4
swissprot - E1C480
swissprot - A0A1D5NWG4
swissprot - A0A1D5PQX2
swissprot - A0A1D5PHM4
Ensembl - ENSGALG00000000672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scmh1ENSDARG00000104311Danio rerio
 SCMH1ENSG00000010803Homo sapiens
 Scmh1ENSMUSG00000000085Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCML2 / Scm polycomb group protein like 2 / Q9UQR0*ENSGALG0000001653739
SCML4 / Scm polycomb group protein like 4 / Q80VG1* / Q8N228*ENSGALG0000001530922
SFMBT1 / Scm like with four mbt domains 1 / Q9JMD1* / Q9UHJ3* / Scm-like with four MBT domains protein 1 *ENSGALG0000000175322
SFMBT2 / Scm like with four mbt domains 2 / Q5VUG0*ENSGALG0000000927920
L3MBTL1 / L3MBTL1, histone methyl-lysine binding protein / A2A5N8* / Q9Y468* / Lethal(3)malignant brain tumor-like protein 1 *ENSGALG0000003071019
ENSGALG0000002965318
L3MBTL2 / L3MBTL2, polycomb repressive complex 1 subunit / P59178* / Q969R5* / Lethal(3)malignant brain tumor-like protein 2 *ENSGALG0000001197615
MBTD1 / mbt domain containing 1 / Q05BQ5* / Q6P5G3* / MBT domain-containing protein 1 *ENSGALG0000000295414
L3MBTL3 / L3MBTL3, histone methyl-lysine binding protein / Q8BLB7* / Q96JM7* / Mus musculus L3MBTL3 histone methyl-lysine binding protein (L3mbtl3), transcript variant 3, mRNA.*ENSGALG0000003403013


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR004092  Mbt repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR021987  SLED domain
 IPR033763  Polycomb group protein, RNA binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0010369 chromocenter IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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