ENSDARG00000104581


Danio rerio

Features
Gene ID: ENSDARG00000104581
  
Biological name :tom1
  
Synonyms : target of myb1 membrane trafficking protein / tom1
  
Possible biological names infered from orthology : O60784 / O88746 / target of myb1 trafficking protein
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 25907266
Gene end: 25939259
  
Corresponding Affymetrix probe sets: Dr.25238.1.A1_at (Zebrafish Array)   Dr.25238.1.A1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130284
Ensembl peptide - ENSDARP00000151444
Ensembl peptide - ENSDARP00000141619
Ensembl peptide - ENSDARP00000138047
NCBI entrez gene - 553244     See in Manteia.
RefSeq - NM_001351652
RefSeq - NM_001351651
RefSeq Peptide - NP_001338580
RefSeq Peptide - NP_001338581
swissprot - A0A0R4IY33
swissprot - A0A0R4IPW0
swissprot - A0A0R4IBS3
ZFIN ID - ZDB-GENE-060721-1
Ensembl - ENSDARG00000104581
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TOM1ENSGALG00000012552Gallus gallus
 TOM1ENSG00000100284Homo sapiens
 Tom1ENSMUSG00000042870Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tom1l2 / target of myb1 like 2 membrane trafficking protein / Q5SRX1* / Q6ZVM7* / TOM1-like protein 2 *ENSDARG0000000921747
TOM1L2 / Danio rerio target of myb1 like 2 membrane trafficking protein (tom1l2), mRNA. / Q6ZVM7* / target of myb1 like 2 membrane trafficking protein*ENSDARG0000005639445
GGA3 (1 of many) / si:ch73-157i16.3 / GGA3* / Q9NZ52* / Q8BMI3* / ADP-ribosylation factor-binding protein GGA3 * / golgi associated, gamma adaptin ear containing, ARF binding protein 3*ENSDARG0000009887120
gga3 / ggolgi-associated, gamma adaptin ear containing, ARF binding protein 3 / Q8BMI3* / Q9NZ52* / ADP-ribosylation factor-binding protein GGA3 * / golgi associated, gamma adaptin ear cont...ENSDARG0000010366719
gga1 / golgi-associated, gamma adaptin ear containing, ARF binding protein 1 / Q8R0H9* / Q9UJY5* / ADP-ribosylation factor-binding protein GGA1 *ENSDARG0000003853719


Protein motifs (from Interpro)
Interpro ID Name
 IPR002014  VHS domain
 IPR004152  GAT domain
 IPR008942  ENTH/VHS
 IPR014645  Target of Myb protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005622 intracellular IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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