ENSGALG00000012552


Gallus gallus

Features
Gene ID: ENSGALG00000012552
  
Biological name :TOM1
  
Synonyms : O12940 / Target of Myb protein 1 / TOM1
  
Possible biological names infered from orthology : O60784 / O88746 / target of myb1 membrane trafficking protein / target of myb1 trafficking protein
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 52167132
Gene end: 52187809
  
Corresponding Affymetrix probe sets: Gga.3792.2.S1_a_at (Chicken Array)   Gga.3792.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020470
Ensembl peptide - ENSGALP00000060965
NCBI entrez gene - 396049     See in Manteia.
RefSeq - NM_205144
RefSeq - XM_015284507
RefSeq Peptide - NP_990475
swissprot - O12940
Ensembl - ENSGALG00000012552
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tom1ENSDARG00000104581Danio rerio
 TOM1ENSG00000100284Homo sapiens
 Tom1ENSMUSG00000042870Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TOM1L2 / target of myb1 like 2 membrane trafficking protein / Q5SRX1* / Q6ZVM7* / TOM1-like protein 2 *ENSGALG0000000490261
TOM1L1 / target of myb1 like 1 membrane trafficking protein / O75674* / Q923U0* / target of myb1-like 1 (chicken)*ENSGALG0000000301128
GGA3 / ADP-ribosylation factor-binding protein GGA3 / Q8BMI3* / Q9NZ52* / golgi associated, gamma adaptin ear containing, ARF binding protein 3*ENSGALG0000000799221
GGA1 / golgi associated, gamma adaptin ear containing, ARF binding protein 1 / Q8R0H9* / Q9UJY5* / ADP-ribosylation factor-binding protein GGA1 *ENSGALG0000003965820
GGA2 / golgi associated, gamma adaptin ear containing, ARF binding protein 2 / Q6P5E6* / Q9UJY4* / ADP-ribosylation factor-binding protein GGA2 *ENSGALG0000000614018


Protein motifs (from Interpro)
Interpro ID Name
 IPR002014  VHS domain
 IPR004152  GAT domain
 IPR008942  ENTH/VHS
 IPR014645  Target of Myb protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome ISS
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0016020 membrane ISS
 molecular_functionGO:0030276 clathrin binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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