ENSMUSG00000042870


Mus musculus

Features
Gene ID: ENSMUSG00000042870
  
Biological name :Tom1
  
Synonyms : O88746 / target of myb1 trafficking protein / Tom1
  
Possible biological names infered from orthology : O60784 / target of myb1 membrane trafficking protein
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: C1
Gene start: 75033705
Gene end: 75070121
  
Corresponding Affymetrix probe sets: 10542108 (MoGene1.0st)   10572880 (MoGene1.0st)   1431188_a_at (Mouse Genome 430 2.0 Array)   1435055_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000130854
Ensembl peptide - ENSMUSP00000148670
Ensembl peptide - ENSMUSP00000148629
Ensembl peptide - ENSMUSP00000148622
Ensembl peptide - ENSMUSP00000148584
Ensembl peptide - ENSMUSP00000148271
Ensembl peptide - ENSMUSP00000077891
NCBI entrez gene - 21968     See in Manteia.
MGI - MGI:1338026
RefSeq - NM_001136259
RefSeq - XM_017312661
RefSeq - XM_006530844
RefSeq - XM_006530843
RefSeq - NM_011622
RefSeq Peptide - NP_001129731
RefSeq Peptide - NP_035752
swissprot - A0A1D5RM84
swissprot - A0A1D5RM51
swissprot - O88746
swissprot - Q3UDC3
swissprot - Q561M4
swissprot - A0A1D5RM12
swissprot - A0A1D5RM45
swissprot - A0A1D5RL90
Ensembl - ENSMUSG00000042870
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tom1ENSDARG00000104581Danio rerio
 TOM1ENSGALG00000012552Gallus gallus
 TOM1ENSG00000100284Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5SRX1 / Tom1l2 / TOM1-like protein 2 / Q6ZVM7* / target of myb1 like 2 membrane trafficking protein*ENSMUSG0000000053860
Gga3 / Q8BMI3 / ADP-ribosylation factor-binding protein GGA3 / Q9NZ52* / golgi associated, gamma adaptin ear containing, ARF binding protein 3*ENSMUSG0000002074021
Q923U0 / Tom1l1 / target of myb1-like 1 (chicken) / O75674* / target of myb1 like 1 membrane trafficking protein*ENSMUSG0000002054121
Gga1 / Q8R0H9 / ADP-ribosylation factor-binding protein GGA1 / Q9UJY5* / golgi associated, gamma adaptin ear containing, ARF binding protein 1*ENSMUSG0000003312820
Gga2 / Q6P5E6 / ADP-ribosylation factor-binding protein GGA2 / Q9UJY4* / golgi associated, gamma adaptin ear containing, ARF binding protein 2*ENSMUSG0000003087218


Protein motifs (from Interpro)
Interpro ID Name
 IPR002014  VHS domain
 IPR004152  GAT domain
 IPR008942  ENTH/VHS
 IPR014645  Target of Myb protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030276 clathrin binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr