ENSDARG00000038537


Danio rerio

Features
Gene ID: ENSDARG00000038537
  
Biological name :gga1
  
Synonyms : gga1 / golgi-associated, gamma adaptin ear containing, ARF binding protein 1
  
Possible biological names infered from orthology : ADP-ribosylation factor-binding protein GGA1 / Q8R0H9 / Q9UJY5
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 22119189
Gene end: 22146258
  
Corresponding Affymetrix probe sets: Dr.4803.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000038214
Ensembl peptide - ENSDARP00000150330
NCBI entrez gene - 798361     See in Manteia.
swissprot - F1QV13
ZFIN ID - ZDB-GENE-040822-13
Ensembl - ENSDARG00000038537
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GGA1ENSGALG00000039658Gallus gallus
 GGA1ENSG00000100083Homo sapiens
 Gga1ENSMUSG00000033128Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gga3 / ggolgi-associated, gamma adaptin ear containing, ARF binding protein 3 / Q8BMI3* / Q9NZ52* / ADP-ribosylation factor-binding protein GGA3 * / golgi associated, gamma adaptin ear cont...ENSDARG0000010366747
GGA3 (1 of many) / si:ch73-157i16.3 / GGA3* / Q9NZ52* / Q8BMI3* / ADP-ribosylation factor-binding protein GGA3 * / golgi associated, gamma adaptin ear containing, ARF binding protein 3*ENSDARG0000009887147
tom1l2 / target of myb1 like 2 membrane trafficking protein / Q5SRX1* / Q6ZVM7* / TOM1-like protein 2 *ENSDARG0000000921716
TOM1L2 / Danio rerio target of myb1 like 2 membrane trafficking protein (tom1l2), mRNA. / Q6ZVM7* / target of myb1 like 2 membrane trafficking protein*ENSDARG0000005639414
tom1 / target of myb1 membrane trafficking protein / O60784* / O88746* / target of myb1 trafficking protein*ENSDARG0000010458113


Protein motifs (from Interpro)
Interpro ID Name
 IPR002014  VHS domain
 IPR004152  GAT domain
 IPR008152  Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain
 IPR008153  Gamma-adaptin ear (GAE) domain
 IPR008942  ENTH/VHS
 IPR013041  Clathrin adaptor, appendage, Ig-like subdomain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0030131 clathrin adaptor complex IEA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000026712 rab5c / RAB5C, member RAS oncogene family / P35278* / P51148*  / complex
 ENSDARG00000051836 si:dkeyp-19e1.3 / B9A6J9* / TBC1D3* / P0C7X1* / Q2M2D7* / Q6DHY5* / Q6IPX1* / Q8IZP1* / Q86UD7* / A6NDS4* / TBC1D3H* / TBC1D3G* / TBC1D3I* / TBC1D3K* / TBC1D3L* / TBC1D26* / TBC1D28* / TBC1...  / reaction / complex
 ENSDARG00000014430 rabgef1 / RAB guanine nucleotide exchange factor (GEF) 1 / Q9JM13* / Q9UJ41* / AC027644.4* / Rab5 GDP/GTP exchange factor * / RAB guanine nucleotide exchange factor 1*  / complex
 ENSDARG00000011088 si:ch211-288d18.1 / B9A6J9* / TBC1D3* / P0C7X1* / Q2M2D7* / Q6DHY5* / Q6IPX1* / Q8IZP1* / Q86UD7* / A6NDS4* / TBC1D3H* / TBC1D3G* / TBC1D3I* / TBC1D3K* / TBC1D3L* / TBC1D26* / TBC1D28* / TB...  / complex / reaction






 

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